Gene
RNA
| Item | Value |
|---|---|
| gene id | G2030785 |
| gene name | LOC106587817 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 41814750 ~ 41821623 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| hyaluronan and proteoglycan link protein 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2322788 | True | 893 | lncRNA | 0.49 | 2 | 41814750 | 41821623 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506143 | LOC106562454 | coding | downstream | 34882 | 41755021 ~ 41779868 (-) |
| LOC118944455 | lysm2 | coding | downstream | 76657 | 41723275 ~ 41738093 (-) |
| LOC118944452 | LOC106587168 | coding | downstream | 139277 | 41665197 ~ 41675473 (-) |
| LOC118944424 | LOC106587313 | coding | downstream | 149670 | 41660302 ~ 41665080 (-) |
| LOC110515873 | LOC106562546 | coding | downstream | 246803 | 41461857 ~ 41567947 (-) |
| LOC110506142 | LOC106562525 | coding | upstream | 5925 | 41827548 ~ 41862932 (-) |
| LOC110506831 | NA | coding | upstream | 70312 | 41891935 ~ 41895295 (-) |
| LOC118944570 | NA | coding | upstream | 71508 | 41893131 ~ 41893245 (-) |
| LOC118936287 | NA | coding | upstream | 85201 | 41906824 ~ 41916531 (-) |
| LOC118944569 | NA | coding | upstream | 89180 | 41910803 ~ 41911004 (-) |
| G2030811 | NA | non-coding | downstream | 9045 | 41805475 ~ 41805705 (-) |
| G2030810 | NA | non-coding | downstream | 10407 | 41804103 ~ 41804343 (-) |
| G2030792 | NA | non-coding | downstream | 63014 | 41751035 ~ 41751736 (-) |
| G2030790 | NA | non-coding | downstream | 64696 | 41749851 ~ 41750054 (-) |
| G2030789 | NA | non-coding | downstream | 65045 | 41749468 ~ 41749705 (-) |
| G2030784 | NA | non-coding | upstream | 1910 | 41823533 ~ 41824041 (-) |
| G2030830 | NA | non-coding | upstream | 42473 | 41864096 ~ 41864334 (-) |
| G2030831 | NA | non-coding | upstream | 44396 | 41866019 ~ 41866320 (-) |
| G2030937 | NA | non-coding | upstream | 66075 | 41887698 ~ 41903072 (-) |
| G2030942 | NA | non-coding | upstream | 68558 | 41890181 ~ 41905076 (-) |
| G2030291 | NA | other | downstream | 602898 | 41211477 ~ 41211852 (-) |
| G2030156 | NA | other | downstream | 907557 | 40906623 ~ 40907193 (-) |
| G2030162 | NA | other | downstream | 915729 | 40898470 ~ 40899021 (-) |
| G2030157 | NA | other | downstream | 926066 | 40887603 ~ 40888684 (-) |
| LOC110506841 | cart | other | upstream | 325737 | 42147360 ~ 42148871 (-) |
| LOC118944568 | LOC106562433 | other | upstream | 394816 | 42214901 ~ 42217502 (-) |
| G2031225 | NA | other | upstream | 521659 | 42343282 ~ 42346725 (-) |
| G2031259 | NA | other | upstream | 546631 | 42368254 ~ 42369909 (-) |
| G2031286 | LOC106562727 | other | upstream | 637634 | 42459257 ~ 42461315 (-) |
