XLOC_004076 (tmf1)


Basic Information

Item Value
gene id XLOC_004076
gene name tmf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17757342 ~ 17782930 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007773
GATGCGCTGCTACGTGGACGGGAAGTAGATCTCGAGCTGCCagaggaaaacaaaacaatgcgTACAAGTCCAACCTAAGAGTCGAGGATtgcgaaagtgaaggaaaaatgtCGCCTATTCCCtcctttaattatttatattatcgaCTTTCGTTTTAGCCCTATATTATGTCGACTGTCAGCAAATTGTCTGTTGTTTTGCGAGCAGAACTAGCCGCCAAGCTAATGTGGACAGCGGcctaacaaaacaaacacacatcaacCTGCTCCGGCTGTTAGTGTGGAATAAAGCTGCTCTCGTTTGggaatgcttttaaaaatgtcgTCTTTTATATAGACGTTCGCTGGACTGTCACACAATCGGGTGGAAGTACGTTAGAGCAATATGAGTTGGTTCAACGCTTCACATCTGTCGAGTTTTGCCAAACAAGCTTTGACAACTGCTCAGAAATCTATCGACAGGGTCCTGGACATTAAAGAAGAGGAGTGGGGTGACACAACCGGACAGAACTTCCCTGATCCACCAGGCAAGCCAGCACCTACGGGATGGGGAATGAACCAGTGGAACTCGCCTACTGAGGAACAAACCACGAGTCCCCCTCCATCCTCTGAGGCCATCACAACGCCTGTCACACGAACAGTGGTTGATGAATCTGAGGATTTCTTCAGTGCCTTTTTGCCTCCTGGGGATGTACAAGCTGTAAGCAACACTAAGGTAGTGTCTGTGGCACCTGCCAAGTCAAACCGCAGACTACGGGAAAAAGCAGACAAGGACAAGGAGTTAGTGGACAATGACTTACAAGGTCAGGCAGAGCTCAGTAAAAGCAGCAGCCAGGAAATAACTGAGATAAAGCCAGCCGGGGCAGAACTTTCAGAGCAGAATTCATCCACTGTGGAAGAGCAGATGCAACCAGAACTGGGTATTCCTGCTTCAGGTGTTGCACCAGAACAAGCTGTAGAACAGGAGTCGATCGAGGACCAAACAGAGTCAGATGGTTTGGTTTTAACTTTAGATGTTCCACTCACAAATGTACCTTCATTTTCCTCAGAGGGTGAATCTGTTGATTCGTTTGATCCACCTTTGAACGTCGAGACCAAAAATCCAGATAAAACCCTGCCTGTCCCTCctaaagaaattattttagaATCCAAAGATGCTAAATCAGAGGACAGACAAAGCGACACCCCTTCTCCTCCTGTTAGTGCCTTCTCCTCTGGAACTTCCACTACCAGCGACATTGAGGTTTTGGACCATGAGAGTGTGCTGAGCGAGAGCTCGGCCAGCTCCAGACAGGAAACAGCTGAGGCTAAAGCAGGTCTGCACCTGATGCAAGGCTCATTCCAGCTTCTCTCCGCTTCAACATGCAGCGACTTCCCTCGCCTGGATGAATATCCCAAACTCACTGAAAGCTGCGGCTCCTCATCTGATGCTTTTGAGCGCATTGACTCGTTTAGCGTGCAGTCGCTGGACAGCCGCAGTGTCAGTGAAGTGAATTCTGATGATGAGATCCCAGGGAACCGTACATTGGCCTCCATCACAGCTGGACCTTTGCCTGCTCCGGCTGAGTCTGTGCCACAGACAAaacaggaggaagaggagggtatGATTGAGTCAATGAATGACCAATCGCTGGATGACAATGAGATGGAGGAAAGTGGCCGCAGTGCAACACCAGTGAACTGTGAGCAGGTAGATGAATTACAAGAAGTCGACCAGGAACCTGAACCTGACCTCACAATGTCCAGTCAAAAAATCGATGTACATGAAACTGTAACACCACTGAGTACTGAAGAAAAACCTGGAGATTCACCCTTCCAGATTTCAGAGCTCCAAAagATTATTGAGGAGCTCTCTGGCCGATTGGAAAAGAGAGAATCACAGTTGCTTGCGGTCAGTAAAGACAAGGCCAGACTTGAGGAGGAGTGTGACAATCTCAAAGATGAGGTGATCAGCTTGAAGGAAGAAAGCTCTTCTGTACAATCTTTAAAAGACGAGTTCACCCAGCGCATTGCTGATGCAGAGAGGAAAGCTCAACTCTCCTGCAAAGAGAGAGACATCGCAAAAAAgGAAATCAAAGGCCTCAGAGAAGAACTGGCAAGCAGGTTAAACTCAAATGAAACTTTGGAACTGATTAAAGAGAAAGAAGAACAGATCCGAGAGCTTCTTGAAGAAGGTGAGAAACTGTCCAAGCAGCAGTTGCAGCACTCCAACATCATTAAGAAACTGCGTGTGAAAGAGAGGGAGAGTGATGCACAAATCGCCAAACAGACCAAAAAACTTAAAGAACAGGAAGAAGAACTGAAACTCTTGCAGCAGGTTATGGATGGTAAGGAGGAAATAGAAAAGCAGCACAGAGAGAACATCAAGAAGCTGAATGCTGTGGTGGAGCGGCAGGAGAAGGAACTAAGTAAACTGCAGACCAGCAGCGAGGAGCTTCAGGAAAAGAGCCGCAGCTTGCAAGCAGCTCTCGACAGCTCCTACAAGGAGTTGGCTGAACTCCACAAGGCCAACGCCTCGAAGGACAGTGAAGCACAGGAGCTTGCGCTGAGCAGAGAGGTGCAGGCAAAAGAAGAGCTGAGTTTGGCTTTGGAGAAAGTCCAAGAAGATTCCCGCCTACAACAAGAGGCACTGGCCAATCAGgtGGCTGATCTGAGGGTGGCTCTACAGAGAGCTGAACAGCAGCAGGCCAAGAAGGAAGATTACCTGAGAGAGGAGATCAGTGAGTTACAGCAGAGGATACAAGAAGCAGAGACAAGAAACCAGGAGTTGAGTCAAAGTGTAACATCAGCAACACGGCCGCTCCTTCGACAGATAGAGAACCTTCAGGCCACCCTTGGGGCTCAGACAGCATCATGGGAAAAACTGGAGAAGAACCTTTCTGACCGCTTAGCTGATGCCCAGGCTCAGCTTGCTGTTTCAGTAGAGAAAGAGCGTTCAGCTACAGAAGAACTGCTAGCCATCCGAGCACAGATAACATCTTTTGAGTCCCAGGCCTCTTTATTGAGGCAGGAGAAGGGGCGTCTGCAGGGACAGCTGGATGCAGAGAGGATGAGGAGGGAAAAACTGGAGGATGACCTAAGCAGGGAACGTGTAGAGCTGGAGAATCTTAAAGGGGAATATGCTCGAGTATCAGAAGACTCCAAGAAGGAGAAGTTGCTTCTCACTAACCAACTCGAAATGGAGAAAATGAAGGTGGAACAGGAGAAGAAGAAATGCTACCTTGCACAAGAGGCCCTCAAAGAAAAGGAGAGGAAGTCTCATCAGTCTGTGACTGATGCTCCAGCTTCCTCCACTCCTTCACTGTCCCGCTCCAGTTCTGTTAGTGGAGCCGATCATGCCGGATTACCTTCCTCCTTCTTCTCACAGCAGGAGGACTCGCTGGACCATTCTTTCAACACTATGACCATGTCCATCAGCGGGACTAACCTGTATGAAGCGGCTCGTCTGGGTGGTGGATCCAGTGTCATTGAGAGCCTACAGTCTCAGCTCAAGCTCAGAGAGGGTGAAATAACACAGCTGCAGATGGAGATTGCTAGTCTAGAGCGAAGTCGCACTGTGATGTCAGAAGAGCTGATCCGATTGACCAATGAGAACGATGAAATGGAGAGTAAAGTGAAGGAAATCCCTAGGCTGAAAGTGCAACTGAAGGATCTTGAACAAAGGCACAACACAATCCTGCAGATGTATGGCGAGAAGGCAGAGGAGGCTGAAGAGCTGCGTCTGGACCTTGAGGATGTAAAGAACATGTACAAACTACAAATAGATGAACTGCTGAAAAACCAGAAACAATGAACTCTGCACATGGACTTGCACACACTGACTGTAAACAGAGCTTTGCAGTAGAAGACATAACTGTGCTTCTCATCTCCGAGCGTTGGTAATAAAAGACcaagtaatttaaatgtatttctttttttctgagaaaagAGTTTGTTTAGCATATTTCAAGGGCCGTCGATTAAAGTTATTTAAGATGTGATTCCTCTCACGGTTGTGggattttacttttaaatgattttgctCTCAGTGAAAGGGATagattatttaaagaaattacatttctgtcattatttactcactctctagtgcttctttcttctgttaggcataaaagaagatgttttgaagaatgtttgaaactggcagccattgacttccactgtttTTCTCAATGGCTGCCGGAtggcttccaacattcttcaaagtatcttcatttgtgttttacagaaaacagaataaatgagtgaatacattttcattttggatgAATATCTCTTTAATAACCATGTTTGGTTTAAGAAATGACATCACTTTCAGTGTATTGGTGTTTAGTTGTGGTGGTTTTTTTTAACACTTAAATTTGCACAGTGAAGTAAGAATTCAGACTTCATGCGTTTGGATTATGATCATCATAACTGAATTGCTATATTTTCCTCTGATCTTCATCCTCTGGGCTGCACATCTTGCTGGTAAGCAGGCGGTTTACAGTTGAAGTGTCTTCTGACATTGTGAAATAATGTAAACCTGTTTTTTTAGTTGATTCCAGGGTACCACACATCATTCAACATGCTTAAGTTAGCCCAGCTCTAGTTATACGTTAAGATTTGCACTCATTTTAATCTCATCTCTCACTGATTGAGTTTTAGTGTTGAGGAGATCCAGGAAAATCTTTTACTGTCATATTCTCAGAGATCGTAACTCTGTGATGTCACTGTAAGATACCTTTCCTGTGTATCTGCAGTTTTATGCACACATGTAAATAAAGTAGGAAATATCTATCGa

Function

symbol description
tmf1 Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMF1 (TATA element modulatory factor 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040801-25 Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMF1 (TATA element modulatory factor 1).

Ensembl:

ensembl_id ENSDARG00000057997

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007773 True 4782 mRNA 0.45 17 17757342 17782930

Neighbor

gene id symbol gene type direction distance location
XLOC_004075 eogt coding downstream 1898 17726649 ~ 17755444 (-)
XLOC_004074 tafa4b coding downstream 43355 17596979 ~ 17713987 (-)
XLOC_004073 NA coding downstream 527489 17223850 ~ 17229853 (-)
XLOC_004072 CR769769.3 coding downstream 609881 17144309 ~ 17147461 (-)
XLOC_004071 CR769769.2 coding downstream 659409 17093753 ~ 17097933 (-)
XLOC_004077 uba3 coding upstream 2252 17785182 ~ 17803137 (-)
XLOC_004078 CR589944.2 coding upstream 123972 17906902 ~ 17908682 (-)
XLOC_004079 cishb coding upstream 176577 17959507 ~ 17964525 (-)
XLOC_004080 twf2b coding upstream 182168 17965098 ~ 17981427 (-)
XLOC_004081 qrich1 coding upstream 214473 17997403 ~ 18107447 (-)
XLOC_004063 CR854846.1 misc downstream 1629664 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 5065651 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 5135575 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 5166046 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 5244080 12512966 ~ 12513262 (-)
XLOC_004070 NA non-coding downstream 666147 17081422 ~ 17091195 (-)
XLOC_004068 AL844563.1 non-coding downstream 1082178 16669218 ~ 16675164 (-)
XLOC_004082 LO018315.7 non-coding upstream 361355 18144285 ~ 18148488 (-)
XLOC_004092 NA non-coding upstream 1066996 18849926 ~ 18852369 (-)
XLOC_004093 NA non-coding upstream 1305484 19088414 ~ 19091101 (-)
XLOC_004095 CT737428.1 non-coding upstream 1397522 19180452 ~ 19180555 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_04792565_04803181 TMF1 coding CI01000058 null 4792565 ~ 4803404 (+)