XLOC_004636 (fam20cb)


Basic Information

Item Value
gene id XLOC_004636
gene name fam20cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18234557 ~ 18343653 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009180
GCAGTGTGTGTTCAGACGCCCTCTTCTTGCACAATCTGACGCTACAGGAAGAAGCGAGCCTGGGCTGCCTGTCCTGCCGTTTTCAAGCTCAGCCAATCCTCAATGTGCGAGGGGCTTCAGCATCATGATATTTAACACACCCACCCCGAACATCCGACCGAGGTATTTCCTCAAGCGCCTGTCAACGGGCAGACATCACCTTCACGAGAGCTGGACGAGCGGCAGGAAACGATGAAACTTTCTCCACATATCACATTTGTCGACGGACGGAAGGAGGTGCGATGCCACACTTTCTCGAGACCTGCCAGGGCTGCCATGCGTCTCGTCGCTTTCACCGTTTGAACAGCCTCGATTCACACCGGATAAGACGAGCGAATGAACTTGTACAGCTGTGAAAGGCATCTCGTGCGCTGTATGAAAAGCGGCAGATGTTTTCTTCGCACGCCGAAATGGACATCGCGAACGCGCACTTTTCTGGATAGTCTACTGTATCCGACGAGGCTTGACTTGTTCGCATTTCGCAGATATCTGCTGCATACGAGCTATTAAATGGTCAAACAGACTATGAGTGACTGTGTCGCGTCTCGTCAACTGACCGCACGGGAGGAATTTAATCGCGAGCGCACGTAAATAACTGGATTATTGTTTGGCATGGATGTACACGAGCGCTTCACCGAATAAACCCTCATCTCTGCCCTTAAACTGGCACATGAAAACGGAGACGTTCCATGCGTTCCCCTCCTAAAATTGGGAGCCCGTGTTTTATGTACAGTTGGCGATGTAGTGCGCTTGCTCACTTTTATCCCTGACATTCCAAACAAGTCGTTTCTCGAACGCGAGAGCCTGAAGATGATCCTCTTTAGAAAATTCCGCGTCTTGATTTTGATGGTGTTTCTTATAGCCTGCTCCATGCACATTATGATAGACTTGTTACCGAAGCTGGAGAGACGGAGCGGTAGCGCGTGCTCGTGCTCACACACACCCAGCGAAGAGCCGCAGAACTGGGCTAAGCATCGAGCCAAGCCGGGATCAGAGTCCGGCTGGCCTAATAAACACACACTCCGAATACTTCAAGACTTCAGCAACGAGCCCAGCTCCAACCTGACCTCTCACTCGCTGGAAAAGATGATGGTCGGTGAGAGAGCCGAGGCTTTGAAGAGATTTGAGCAGCTGACAGGTGATGAGAGGAGGCTCGCGACGCGGGACTCTGCCTTCAAGAACGCAGCGGTCAAGGGTTCGAGGCTCTCGGCGCTGTTTGAGCATCCTTTATACACCAGGCCATTGCCTCCTTTAACTGACGAAGACACTTTATTCAATGTCAACACTGATATACGGTTTGACCCTAAAGCTGCGGAGAATCCAGAGTGGAATGGGGAAAGTAAAGATGGGGATTATGCGCCTACGGGTGAGATGTCTTCAGACTCCTACCCAAACTGGCTCCGCTTCCACATTGGGATCAACCGGTATGAGCTTTACTCCAGGCATAACCCGGTTATTGACGCAATGCTGAAGGATCTGGTTTCGCAAAGGATCACCAGTGTTGCAATGAAATCTGGAGGCACGCAGCTGAAGCTCATCATGACATTCCAGAACTACGGCCAGGCCCTTTTCAAACCCATGAAGCAGACACGGGAGCAGGAGACACCACCAGACTTCTTCTACTTCTCTGATTTCGAGAGGCACAATGCTGAGATCGCAGCATATCATCTAGACAGGATCCTGGATTTCCGCAGAGTGCCGCCGGTGGCCGGGAGACTAGTTAATATGACCAAAGAGATCCGAGACGTGACCCGTGACAAAAAACTGTGGAGAACTTTCTTCATTTCACCAGCCAATAACATCTGTTTCTACGGTGAATGTTCGTACTACTGCTCTACTGAACACGCTCTGTGCGGAAAACCTGATCAGATCGAAGGGTCTTTAGCAGCTTTTCTGCCTGATCTTTCCTTGGCAAAACGCAGGACCTGGAGAAACCCCTGGAGAAGATCCTATCACAAACGCAAGAAAGCAGAgtGGGAAGTGGATCCAGATTATTGTGAAGAAGTGAAGCAGACGCCGCCGTATGATAGTGGCACACGTCTGCTGGACATCATGGATATGACCATTTTTGATTTCCTTATGGGAAACATGGATCGTCATCATTATGAGACGTTTGAAAAGTTTGGGAATGAAACTTTCATTATTCATCTTGATAATGGAAGAGGttttggtaaACATTCTCATGATGAACTTTCCATTCTGGTGCCTTTGAGTCAATGCTGCAGAGTGAAGAAGTCCACTCATTTACGGCTTCAGCTTGTGGCTAAAGAAGAGTTTAAACTGAGCTCTCTGATGGAGGAAAGTCTCCAGACGGACACACTGTCACCCATCCTCATCAGGCCTCATCTTGAGGCTATGGACCGCCGGTTGCGTCTGGTGCTACAGGTATTGGCCGACTGCATTGAGAAGGAGGGCTACAGTAATGTAGTGGAGGACGACATGGGCACAGAGGGCATGGACACAGGCACAGTCCCGCAGAGGTAG

Function

symbol description
fam20cb Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in enamel mineralization and protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to colocalize with Golgi apparatus. Human ortholog(s) of this gene implicated in amelogenesis imperfecta. Orthologous to human FAM20C (FAM20C golgi associated secretory pathway kinase).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0070166 enamel mineralization biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050301-4 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in enamel mineralization and protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to colocalize with Golgi apparatus. Human ortholog(s) of this gene implicated in amelogenesis imperfecta. Orthologous to human FAM20C (FAM20C golgi associated secretory pathway kinase).

Ensembl:

ensembl_id ENSDARG00000090338

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009180 True 2523 mRNA 0.50 10 18234557 18343653

Neighbor

gene id symbol gene type direction distance location
XLOC_004635 NA coding upstream 6553 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 coding upstream 108783 18125658 ~ 18125774 (+)
XLOC_004633 trrap coding upstream 129441 17927871 ~ 18105116 (+)
XLOC_004632 tmem130 coding upstream 359287 17865374 ~ 17875270 (+)
XLOC_004631 bhlha15 coding upstream 477652 17754859 ~ 17756905 (+)
XLOC_004637 FOXL3 coding downstream 14429 18358082 ~ 18362422 (+)
XLOC_004638 noxo1b coding downstream 101951 18445604 ~ 18454422 (+)
XLOC_004639 rnf151 coding downstream 114849 18458502 ~ 18464975 (+)
XLOC_004640 neurl2 coding downstream 181300 18524953 ~ 18527221 (+)
XLOC_004641 msrb1b coding downstream 185575 18529228 ~ 18571563 (+)
XLOC_004625 NA non-coding upstream 807177 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 non-coding upstream 888890 17345550 ~ 17345667 (+)
XLOC_004618 dre-mir-107a non-coding upstream 1273776 16960693 ~ 16960781 (+)
XLOC_004644 AL772266.2 non-coding downstream 255197 18598850 ~ 18598964 (+)
XLOC_004648 NA non-coding downstream 517625 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 924106 19267759 ~ 19271156 (+)
XLOC_004667 BX649366.2 non-coding downstream 1044490 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 1115156 19458809 ~ 19459285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01384163_01441190 FAM20CB, FAM20C coding CI01000063 null 1383198 ~ 1441349 (+)
bowfin (Amia calva) AMCG00018434 NA coding CM030135.1 CM030135.1 10925036 ~ 10934367 (+)