G105734 (gdf9)


Basic Information

Item Value
gene id G105734
gene name gdf9
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17824639 ~ 17862250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU141979
TCTTAGTTTGttttttttttaaatagacatGACATGCATAAAGTCACATTCttaatttaacttaaaaaaaaaaaatatacaaaagtcATACAACACAAATTTTCTTCTTTAAGTGTGTCAGATCAATACTATGTTGCAAACAGTAAGTTTCTAGAACAGGATGCATTGGCACCCTTTCTTGTCACGCCTTAACATAAAAAGGATATAAATGTCACccttccacatttttcacaggGATAAAATACTTTTTGTTTAAGTAAACACACCTGCTCCAGATCAAACTTCATGCACAACGATTTTACAAATTCATGAAATCACTGAACCTGGTCAGAATATCCAGTACTTGGATAGAGTCCACCTGTGATGAGGTTTGTGGTGATGTTCTATTCagctagaagaaaaaaaaagaacagacatGTTGGTAGCTGGCTTAGCGACATGTACACCTGGTGGCAACCATGTCTTCAAACTCCTTGTAGACATAGGAGCCATCCTCTTCAAACATCATGACACTCAGGGGGTTGTAATGGGAGGGAATACACGAGGGCCTGGGCACAGAGGAGTCAAGCTTCTCATAGATGATGTTTTGCACCATGGTGTGCACAGGTGAGCCGTAGATGAAGCCCATGGTCCTCGGGCAGATGCCTCTGCAGTACCTGGGGTTGTACTTTGGTGGAAAAACAATCCAGTGATCCAGTTTAAGTTGGCTAAATCGCACCCTGAAATCATACAAGGCACAGTCGCTTGTCTGGAATTCAGAGCTTGGAAGAAGCTCAGGCAGGTGGAAATCAAGACCTTTATCGCCTTGTTTGCTCTTTGAAGATTCCCTTTTCCATCTTCTCATTCGCCCAGTCCTCTGCTCTGGTTTGAAAACTATCGGTTTGTGAAATGTGTTTGCCTCAGTGGCTGGTCTTTGATCTGCTTTGACCAGAAACCTCTGGTGGCTGATTTTGCTGGTGTCATCAAGATAAAGAAGCAGAGGAGGGGACCTCAGGGTGAACTTCTGTGGGCCTTTGCGCTCATCACCACTGGCTCTTTGTTCCTCTGGGCAGGTGACATTGATTAGCAGGTttatgttcttcttcttctgaaacTTTAAAAGAGGCTGGAGAAATGAGGTGACATCAACCTCCACCCAGTTCCCCCTGCTCCGCTCGTCTGTCCTGACTGTGAAGTTCACAGCGTTGTGGACCCCAGGACACAGCGGACACTGGTTTGAAGGCTCCTGTTCCTTGAGACTCAGGTAACATACAGAGTTGATAGGTGCTGCATGGTCAAAATTATACAGCAGGGCCAACTTCAGAAGCTGTTCTTTTCTTCTAACTTGATCAAGGCTGTAGGAAAGATCCTGCATAAAACTCTCT

Function

symbol description
gdf9 Predicted to enable cytokine activity and type I activin receptor binding activity. Acts upstream of or within female sex determination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in fertilized egg; gonad; and immature gonad. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 14. Orthologous to human GDF9 (growth differentiation factor 9).

NR:

description
PREDICTED: growth/differentiation factor 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141979 True 1364 lncRNA 0.44 2 17824639 17862250

Neighbor

gene id symbol gene type direction distance location
fgf16 fgf16 coding upstream 147843 17670197 ~ 17676796 (+)
uprt uprt coding upstream 201095 17618542 ~ 17623544 (+)
LOC120566523 LOC108240568,LOC103359160,LOC106514372 coding upstream 320367 17500411 ~ 17504272 (+)
LOC120567257 LOC104923207,LOC108240567,LOC108240539,LOC107089023 coding upstream 374683 17445592 ~ 17449956 (+)
LOC120566522 LOC107373325,LOC103391192,LOC108240538 coding upstream 461064 17360382 ~ 17363575 (+)
LOC120567299 sept8 coding downstream 2194 17864444 ~ 17881876 (+)
ccng1 ccng1 coding downstream 20233 17882483 ~ 17887495 (+)
gabrb2a gabrb2,LOC102788768 coding downstream 37721 17899971 ~ 17933474 (+)
atp10b atp10b,LOC104956132 coding downstream 78050 17940300 ~ 17958880 (+)
atp7a atp7a coding downstream 107638 17969888 ~ 17987028 (+)
G105688 NA non-coding upstream 115470 17705876 ~ 17709169 (+)
G105685 NA non-coding upstream 124912 17697763 ~ 17699727 (+)
G105676 atrx,LOC102794659 non-coding upstream 142008 17679699 ~ 17682631 (+)
G105667 NA non-coding upstream 198851 17586017 ~ 17625788 (+)
G105652 NA non-coding upstream 318610 17505823 ~ 17506029 (+)
G105791 NA non-coding downstream 106500 17968750 ~ 17968955 (+)
LOC120567419 NA non-coding downstream 129368 17991618 ~ 17994385 (+)
G105798 NA non-coding downstream 139185 18001435 ~ 18001780 (+)
G105843 NA non-coding downstream 196776 18059026 ~ 18059681 (+)
G105845 NA non-coding downstream 204200 18066450 ~ 18068403 (+)
G105677 NA other upstream 138940 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 360417 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 464377 17357508 ~ 17360262 (+)
G105542 NA other upstream 673132 17141983 ~ 17151507 (+)
G105536 NA other upstream 696854 17126355 ~ 17127785 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other downstream 27920 17890170 ~ 17899731 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 1101684 18963934 ~ 18969946 (+)
G106237 spock1 other downstream 1742590 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 2166613 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 2489471 20351721 ~ 20352167 (+)

Expression


Co-expression Network