LOC120574090 (LOC101479176,LOC102292774,LOC102776828)


Basic Information

Item Value
gene id LOC120574090
gene name LOC101479176,LOC102292774,LOC102776828
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2931036 ~ 2941619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824163.1
tgtgtgtgtgtgtgtgtgtgtgtgtgtgggcgtctgtctctgtgtgacatcatcagcaCTCTGATACAGACCGCAGGACTGAGCACATGTTTCTTCATCACCTGGAACAGTTACTCTTCGTGGCCAGACTGTGTTTGATCAACGGACGTCATTACTCTCAGACTGAGACTACTTCTCGTTTCTCCTCTTTTTAGGCGTGCGAACAGCTGAGAGTGGACAGCAGCGGAGTGACCGATCAacggaaagaagaaaggaaaaacagaTTCAGCGTCCTGAAGAGCCATGGAACTATCACTGGCCCACCCAGCAATCAAAGCCTTCATGTGCGGCTCCGTCAGCGGGACATGCTCCACGCTGCTCTTCCAGCCTCTCGACCTGGTCAAGACCCGTCTGCAGACTTTGCAGAGCGGCATGCAGCCTGGTTCGGGCCGAGTGGGGATGGTGACTGTGCTCCTGAGCGTGGTGCGAACAGAGAGGCTGCTGGGACTGTGGAAAGGAGTTTCACCGTCCTTTGCTCGGACCATCCCCGGCGTCGGGATCTACTTCAGCACCTACTACTCCCTGAAGCAGCACTTCCTGCAGGACCGCAGCCCCGGGGCCGCCGAGGCCGTGCTTCTGGGAGGCTCGGCCCGGACGGTGGCGGGCGTCTTCATGCTGCCGGTCACCGTCATCAAGACACGCTTTGAATGTGGCAGGTACAGTTACGGGAGCGTGACCGGTGCTCTGCGCAGCGTGTGTCGGACCGAAGGTCCTGGCGCTCTGTTCTCCGGCCTGATGGCCACTCTGCTCCGAGACGTTCCTTTCTCCGGTATCTACGTCATGTTGTACAGCCAGGCCAAGGCCTCGCTGCCAAAAGAAATGCGCTCGTCTGCGTCTGCCCCGCTGGCTACCTTCAGCTGCGGGGTCGTGGCGGGCGTGTTGGCGTCTCTGATCACGCAGCCGGCCGACGTGGTTAAAACGCACGTCCAGGTGAATCCACAGCTGAGGACGGCGCTGGCGATCCGACACATCTACACGgagcACAGGCTGCAGGGTTTCTTCAGAGGGGCGGTGCCCCGGGCTCTGAGGAGGACCATGATGGCCGCCATGGCGTGGACGGTCTACGAGCAGATGATGACCAGTATAGGACTGAAGTCCTGAAGGGAGAAAAGGATGACGAGAAGCTTGTGAAAGAGAACAGAAGAGAGTCACAGAGTGACGACCGTAATGTTAACAGGAAGGAAGGATACGCCTGAGAGTTCAAGACTTTGAATGACTTCAGATATTTCGCCAGGTGAATGAAGCCAcctggtgtctaagtgactaaccCACCTTACAGGAGACCTCATGTGGAGACTCTTCACTGGCTGACGCTGGAACCAGACTTTAGGCCAGGGCTTTGTTACTCTGGAGAACATATTCTAAAGtgcacatattatgcttttgggctttttctcgttcctttattgtgttatatatctttttttgtgcatgttatactgtaggtttacaaagtgaaaaagcccaaagtcccccccaaagg
>XM_039824165.1
AGGAACCGGCTGCTCGCTGTCCTGTTAGAGAGCAGGGAGACAGGTCAAAGTGACAGGGCAGTCCTGGTTGTTTTAGGAAGAATAAGAAGACCAATTTTTAATTAAACAAGAGCCCTGTCCCTGTCAAACAACGTGCATGTCTTTCATTCACCGTATGCTATTACAGCTAGCTAACCGGTTGCGTCAGACTTGTGATATCAGTCCGTGCAGAAGATTTGAGGACCGGCGTGCGAACAGCTGAGAGTGGACAGCAGCGGAGTGACCGATCAacggaaagaagaaaggaaaaacagaTTCAGCGTCCTGAAGAGCCATGGAACTATCACTGGCCCACCCAGCAATCAAAGCCTTCATGTGCGGCTCCGTCAGCGGGACATGCTCCACGCTGCTCTTCCAGCCTCTCGACCTGGTCAAGACCCGTCTGCAGACTTTGCAGAGCGGCATGCAGCCTGGTTCGGGCCGAGTGGGGATGGTGACTGTGCTCCTGAGCGTGGTGCGAACAGAGAGGCTGCTGGGACTGTGGAAAGGAGTTTCACCGTCCTTTGCTCGGACCATCCCCGGCGTCGGGATCTACTTCAGCACCTACTACTCCCTGAAGCAGCACTTCCTGCAGGACCGCAGCCCCGGGGCCGCCGAGGCCGTGCTTCTGGGAGGCTCGGCCCGGACGGTGGCGGGCGTCTTCATGCTGCCGGTCACCGTCATCAAGACACGCTTTGAATGTGGCAGGTACAGTTACGGGAGCGTGACCGGTGCTCTGCGCAGCGTGTGTCGGACCGAAGGTCCTGGCGCTCTGTTCTCCGGCCTGATGGCCACTCTGCTCCGAGACGTTCCTTTCTCCGGTATCTACGTCATGTTGTACAGCCAGGCCAAGGCCTCGCTGCCAAAAGAAATGCGCTCGTCTGCGTCTGCCCCGCTGGCTACCTTCAGCTGCGGGGTCGTGGCGGGCGTGTTGGCGTCTCTGATCACGCAGCCGGCCGACGTGGTTAAAACGCACGTCCAGGTGAATCCACAGCTGAGGACGGCGCTGGCGATCCGACACATCTACACGgagcACAGGCTGCAGGGTTTCTTCAGAGGGGCGGTGCCCCGGGCTCTGAGGAGGACCATGATGGCCGCCATGGCGTGGACGGTCTACGAGCAGATGATGACCAGTATAGGACTGAAGTCCTGAAGGGAGAAAAGGATGACGAGAAGCTTGTGAAAGAGAACAGAAGAGAGTCACAGAGTGACGACCGTAATGTTAACAGGAAGGAAGGATACGCCTGAGAGTTCAAGACTTTGAATGACTTCAGATATTTCGCCAGGTGAATGAAGCCAcctggtgtctaagtgactaaccCACCTTACAGGAGACCTCATGTGGAGACTCTTCACTGGCTGACGCTGGAACCAGACTTTAGGCCAGGGCTTTGTTACTCTGGAGAACATATTCTAAAGtgcacatattatgcttttgggctttttctcgttcctttattgtgttatatatctttttttgtgcatgttatactgtaggtttacaaagtgaaaaagcccaaagtcccccccaaagg

Function

NR:

description
solute carrier family 25 member 38-A

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824163.1 False 1522 mRNA 0.55 7 2933118 2941619
XM_039824165.1 True 1553 mRNA 0.55 8 2931036 2941619

Neighbor

gene id symbol gene type direction distance location
LOC120574089 LOC103376082 coding upstream 2839 2873955 ~ 2928197 (+)
txn2 LOC104942977 coding upstream 69967 2843580 ~ 2861069 (+)
ddx39ab LOC103375030,LOC108439109,LOC100706537 coding upstream 132169 2787615 ~ 2798867 (+)
si:ch211-106h11.1 LOC103371866,LOC102800031 coding upstream 147391 2770369 ~ 2783645 (+)
engl NA coding upstream 197811 2698926 ~ 2733225 (+)
rpsa rpsa coding downstream 5792 2947411 ~ 2953510 (+)
ubn2b NA coding downstream 16313 2957932 ~ 2986853 (+)
LOC120574496 LOC100710752 coding downstream 222598 3164217 ~ 3255883 (+)
smarca4a smarca4 coding downstream 341989 3283608 ~ 3321386 (+)
kri1 kri1,LOC105353547 coding downstream 427195 3368814 ~ 3384569 (+)
G151106 NA non-coding upstream 1306 2637789 ~ 2929730 (+)
G151112 NA non-coding upstream 201541 2728744 ~ 2729495 (+)
G151104 NA non-coding upstream 238267 2617916 ~ 2692769 (+)
G151100 NA non-coding upstream 298982 2585422 ~ 2632054 (+)
G151093 NA non-coding upstream 440900 2474896 ~ 2490136 (+)
G151243 NA non-coding downstream 55490 2997109 ~ 2997374 (+)
G151244 NA non-coding downstream 56438 2998057 ~ 2998259 (+)
G151247 NA non-coding downstream 63999 3005618 ~ 3015522 (+)
G151292 LOC103364965 non-coding downstream 181123 3122742 ~ 3141705 (+)
G151312 NA non-coding downstream 203635 3145254 ~ 3145605 (+)
G151122 LOC103375031,LOC102776069 other upstream 128815 2799469 ~ 2802221 (+)
LOC120574078 LOC103371863,LOC106930631,LOC103154952,LOC106957020,LOC105929964 other upstream 239474 2645826 ~ 2691562 (+)
G150960 NA other upstream 714037 2148731 ~ 2216999 (+)
G150905 NA other upstream 863388 1936920 ~ 2067648 (+)
G150804 NA other upstream 1162142 1761280 ~ 1768894 (+)
G151240 NA other downstream 60280 3001899 ~ 3003364 (+)
junbb LOC103364966,LOC107087652,LOC104932219,LOC100707881,LOC105929935 other downstream 142279 3083898 ~ 3104592 (+)
G151315 NA other downstream 204885 3146504 ~ 3147977 (+)
LOC120573829 NA other downstream 301991 3243610 ~ 3277604 (+)
ldlra ldlr other downstream 389385 3331004 ~ 3357195 (+)

Expression


Co-expression Network