RNA id: XM_039824165.1


Basic Information

Item Value
RNA id XM_039824165.1
length 1553
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC120574090
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2931036 ~ 2941619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAACCGGCTGCTCGCTGTCCTGTTAGAGAGCAGGGAGACAGGTCAAAGTGACAGGGCAGTCCTGGTTGTTTTAGGAAGAATAAGAAGACCAATTTTTAATTAAACAAGAGCCCTGTCCCTGTCAAACAACGTGCATGTCTTTCATTCACCGTATGCTATTACAGCTAGCTAACCGGTTGCGTCAGACTTGTGATATCAGTCCGTGCAGAAGATTTGAGGACCGGCGTGCGAACAGCTGAGAGTGGACAGCAGCGGAGTGACCGATCAacggaaagaagaaaggaaaaacagaTTCAGCGTCCTGAAGAGCCATGGAACTATCACTGGCCCACCCAGCAATCAAAGCCTTCATGTGCGGCTCCGTCAGCGGGACATGCTCCACGCTGCTCTTCCAGCCTCTCGACCTGGTCAAGACCCGTCTGCAGACTTTGCAGAGCGGCATGCAGCCTGGTTCGGGCCGAGTGGGGATGGTGACTGTGCTCCTGAGCGTGGTGCGAACAGAGAGGCTGCTGGGACTGTGGAAAGGAGTTTCACCGTCCTTTGCTCGGACCATCCCCGGCGTCGGGATCTACTTCAGCACCTACTACTCCCTGAAGCAGCACTTCCTGCAGGACCGCAGCCCCGGGGCCGCCGAGGCCGTGCTTCTGGGAGGCTCGGCCCGGACGGTGGCGGGCGTCTTCATGCTGCCGGTCACCGTCATCAAGACACGCTTTGAATGTGGCAGGTACAGTTACGGGAGCGTGACCGGTGCTCTGCGCAGCGTGTGTCGGACCGAAGGTCCTGGCGCTCTGTTCTCCGGCCTGATGGCCACTCTGCTCCGAGACGTTCCTTTCTCCGGTATCTACGTCATGTTGTACAGCCAGGCCAAGGCCTCGCTGCCAAAAGAAATGCGCTCGTCTGCGTCTGCCCCGCTGGCTACCTTCAGCTGCGGGGTCGTGGCGGGCGTGTTGGCGTCTCTGATCACGCAGCCGGCCGACGTGGTTAAAACGCACGTCCAGGTGAATCCACAGCTGAGGACGGCGCTGGCGATCCGACACATCTACACGgagcACAGGCTGCAGGGTTTCTTCAGAGGGGCGGTGCCCCGGGCTCTGAGGAGGACCATGATGGCCGCCATGGCGTGGACGGTCTACGAGCAGATGATGACCAGTATAGGACTGAAGTCCTGAAGGGAGAAAAGGATGACGAGAAGCTTGTGAAAGAGAACAGAAGAGAGTCACAGAGTGACGACCGTAATGTTAACAGGAAGGAAGGATACGCCTGAGAGTTCAAGACTTTGAATGACTTCAGATATTTCGCCAGGTGAATGAAGCCAcctggtgtctaagtgactaaccCACCTTACAGGAGACCTCATGTGGAGACTCTTCACTGGCTGACGCTGGAACCAGACTTTAGGCCAGGGCTTTGTTACTCTGGAGAACATATTCTAAAGtgcacatattatgcttttgggctttttctcgttcctttattgtgttatatatctttttttgtgcatgttatactgtaggtttacaaagtgaaaaagcccaaagtcccccccaaagg

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204679 lncRNA upstream 1306 2637789 ~ 2929730 (+) True G151106
TU204688 lncRNA upstream 201541 2728744 ~ 2729495 (+) True G151112
TU204674 lncRNA upstream 238267 2617916 ~ 2692769 (+) False G151104
TU204672 lncRNA upstream 238267 2691637 ~ 2692769 (+) False G151104
TU204673 lncRNA upstream 238267 2691637 ~ 2692769 (+) True G151104
TU204724 lncRNA downstream 641 2942260 ~ 2944611 (+) True G151130
TU204940 lncRNA downstream 55490 2997109 ~ 2997374 (+) True G151243
TU204941 lncRNA downstream 56438 2998057 ~ 2998259 (+) True G151244
TU204946 lncRNA downstream 63999 3005618 ~ 3015522 (+) True G151247
TU204997 lncRNA downstream 142279 3083898 ~ 3104545 (+) False junbb
XM_039824161.1 mRNA upstream 2839 2873955 ~ 2928197 (+) True LOC120574089
XM_039824162.1 mRNA upstream 2839 2873955 ~ 2928197 (+) False LOC120574089
XM_039824005.1 mRNA upstream 69967 2843580 ~ 2861069 (+) True txn2
XM_039824002.1 mRNA upstream 132169 2787615 ~ 2798867 (+) True ddx39ab
XM_039825981.1 mRNA upstream 147391 2770369 ~ 2783645 (+) True si:ch211-106h11.1
XM_039824166.1 mRNA downstream 5792 2947411 ~ 2953510 (+) True rpsa
XM_039824167.1 mRNA downstream 16313 2957932 ~ 2986853 (+) True ubn2b
XM_039825767.1 mRNA downstream 161022 3102641 ~ 3104592 (+) True junbb
XM_039824835.1 mRNA downstream 222598 3164217 ~ 3255883 (+) True LOC120574496
XM_039823688.1 mRNA downstream 322477 3264096 ~ 3276150 (+) True LOC120573829
TU204708 other upstream 128815 2799469 ~ 2802221 (+) True G151122
TU204669 other upstream 239474 2689720 ~ 2691562 (+) False LOC120574078
TU204682 other upstream 241998 2685103 ~ 2689038 (+) False LOC120574078
TU204412 other upstream 714037 2148731 ~ 2216999 (+) False G150960
TU204410 other upstream 776188 2148731 ~ 2154848 (+) False G150960
TU204936 other downstream 60280 3001899 ~ 3003364 (+) True G151240
TU205031 other downstream 204885 3146504 ~ 3147977 (+) True G151315
XR_005642000.1 other downstream 439668 3381287 ~ 3381386 (+) True LOC120575509
XR_005642001.1 other downstream 440895 3382514 ~ 3382613 (+) True LOC120575510
TU205238 other downstream 717378 3658997 ~ 3663282 (+) True G151471

Expression Profile