casr (casr)


Basic Information

Item Value
gene id casr
gene name casr
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 22119682 ~ 22126039 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776640.1
ATTCAGCACCTTGGATATTTTTGGCAAAAGGCCTTAAAAGCTGCGTATACCTGCAAATTAACTGTTTCAAGCGTATTTAAATCACACACTCAGAAGTTCAGGCGaGTCAGAGAATCTTCTCAGTGCAAACATGAATAACACAAAACAGCGCAGTAGCCAGTTCGCTGGGAGAAGATACTACTGAGAATACCTTCACTCTGGGGAATTGTAAAGAATAATCCTATCCATTAGAAAGATGAGAAAGATGAAACTGGTTCTGTATTACCTGATAGTGTTGGGGTCCAGTGTTGTGATTTCAACTTATGGGCCCCATCAGTTAGCACAGATGACTGGTGATATTTTGCTTGGAGGTCTTTTCCCAATACACTTTGGTGTTGCATCCAAAGACCAAGACCTCGCAGCTCGGCCCGAATCCACACAGTGTGTCAGGTTCAATTTCCGAGGTTTCCGTTGGCTACAGGCCATGATTTTTGCAATTGATGAGATAAACAACAGCAGTACTCTCCTGCCCAACATCACCCTTGGCTACAGAATCTTTGACACATGCAACACAGTGTCAAAAGCCCTGGAAGCTACACTTAGTTTTGTTGCCCAAAATAAGATTGACTCCCTGAATTTAGATGAATTTTGTAATTGCACTGATCACATCCCAGCAACCATTGCAGTCGTAGGAGCAGCTGGATCTGCAGTCTCCACAGCAGTCGCAAATCTACTGGGTCTTTTTTATATTCCTCAGATCAGCTATGCCTCTTCTAGTCGCCTACTGAGCAACAAGAAACAGTACAAGTCCTTCATGAGAACCATTCCAACCGATGAGTACCAGGCCACAGCCATGGCAGACATCATTGAGTACTTTGAGTGGAACTGGGTCATTGCTGTGGCCTCAGATGACGACTATGGGCGCCCAGGAATCGAAAAGTTTGAGAAGGAGATAGAGGAGCGAGACATCTGCATTCACCTTAATGAGCTTATTTCTCAGTACTTTGAGGATCATGAAATCCAAGCGCTGGCTGACAGAATTGAGAACTCAACAGCTAAAGTCATTGTTGTATTTGCCAGTGGCCCTGATATCGAGCCTTTAATCAAAGAGATGGTGAGGAGAAACATCACAGATCGTATCTGGTTAGCCAGTGAAGCGTGGGCTAGCTCCTCTCTTATTGCAAAACCAGAATATCTTGATGTTGTGGCGGGTACAATTGGCGTCGCTTTGAAGGCAGGGCGTATATCTGGCTTTAGAGAGTTCCTACAAAAGGTCCaaccaaagagagacagtcATAATGAATTTGTCAGGGAGTTTTGGGAAGAAACCTTTAACTGTTATCTGGAAGACAGCCCGAGACAGCGAGAAAGTGAGAATGGCAGCACTAGTTTCAGGCCTTTGTGTACTGGTGAGGAAGACATCACGAGTGTTGAGACCCCGTACCTGGACTACACACACCTTCGTATATCCTATAATGCGTATGTTGCAGTTTATTCCATTGCACAGGCTCTGCAGGACATACTCACCTGCACACCCGGACATGGACTCTTTGCCAACAATTCCTGTGCAGATATAAAGAAAATGGAAGCATGGCAGGTCCTGAAGCAGCTCAGACATTTGAACTACACCAACAGTATGGGGGAAAAGATGCACTTTGATGAGAACGCAGACATGGCAGCAAACTACACTATTATAAACTGGCACAGGTCTGCTGAGCATGGCTCTGTGGTGTTTGAGGAGGTCGGATACTACAACATGCACATCAAGAGAGGAGCCAAACTGTTTATTGACAAGACAAAGATTTTGTGGAATGGATACAGTTCTGAGGTGCCATTTTCTAATTGCAGTGAAGACTGTGAACCTGGTACAAGAAAGGGGATCATAGACAGTATGCCCACATGTTGCTTTGAATGCACTGAGTGCTCAGATGGAGAGTACAGTAACCATAAAGatgCCAGTGTTTGCACCAAGTGTCCAAATAACTCTTGGTCCAATGGGAACCACACATTCTGCTTCCTGAAGGAAATTGAGTTTCTCTCATGGACAGAACCATTCGGGATAGCTTTGGCCATATGCGCAGTGCTGGGTGTTGTCTTGACAGCTTTTGTGATGGGAGTCTTTGTCCGATTTTGCAACACCCCAATAGTAAAAGCCACAAACCGAGAACTGTCCTATGTCCTCCTGTTCTCACTCATCTGTTGCTTCTCCAGCTCACTCGTCTTCATCGGAGAGCCACAGGATTGGACATGCCGTTTACGCCAACCTGCCTTTGGGATCAGTTTTGTTCTCTGTATCTCCTGCATCCTCGTGAAAACCAACAGAGTGCTTTTGGTATTTGAAGCCAAGATCCCCACAAGTCTCCATCGTAAATGGTGGGGATTAAACCTGCAGTTTCTGTTGGTGTTTCTGTGCACATTTGTCCAGGTCATGATATGTGTGGTCTGGCTTTACAACGCCCCTCCTTCCAGCTACAGGAATCATGACATTGATGAGATCATTTTTATCACCTGCAATGAGGGCTCTGTGATGGCTCTTGGGTTTCTTATTGGCTACACATGCCTCCTGGCAGCTATATGTTTCTTCTTTGCATTCAAATCACGGAAACTTCCAGAAAACTTCACAGAGGCCAAATTTATCACTTTCAGTATGCTCATATTCTTTATTGTTTGGATCTCTTTCATCCCTGCGTACTTTAGTACATACGGAAAGTTTGTTTCAGCTGTGGAGGTCATTGCTATACTGGCATCTAGCTTTGGGTTGCTGGCCTGTATCTTCTTCAACAAGGTCTACATCATCCTCTTCAAACCCTCCAGGAACACCATTGAGGAAGTCCGATGCAGCACCGCAGCCCACGCTTTCAAAGTGGCTGCCAAAGCTACACTGAAACATAATACAGCTGCAAGAAAAAGGTCTGGCAGCATTGGTGAATCTTCTGCCTCAACTCCGTCCTCATCCATTAGCCTCAAGACCAACAGCAATGACTGCAACTCGACTTCAGGAAGGAATAAGCCAAGAGTGAGCTTTGGCAGTGGAACAGTTACTCTGTCCTTGAGTTTCGATGAGCCGAGGAGGAGTTCTCTAATGTAATAGCATAATGTGGATGTGTCAAACATCAGCTTCGTCAATCTCATTATTAGGCTGTACTTTTGGACTTTATTTAGAAATTTATTTACACATAGAACTTTTCATCTTCTCATTTTCTTAACATTTTGTCAGACAGATGATCAGTCTAACTAATATACTGTACTACCTGAATCCTGAGAATCTTAATATTTTCAGCATAACCTGAAGTACACTAAgcctattaataataata

Function

symbol description
casr Predicted to enable G protein-coupled receptor activity. Acts upstream of or within calcium ion homeostasis and skeletal system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including head; integument; nervous system; notochord; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including autosomal dominant hypocalcemia (multiple); hypercalcemia (multiple); hyperparathyroidism (multiple); idiopathic generalized epilepsy 8; and nephrolithiasis (multiple). Orthologous to human CASR (calcium sensing receptor).

NR:

description
extracellular calcium-sensing receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04612 CASR; calcium-sensing receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776640.1 True 3296 mRNA 0.44 7 22119682 22126039

Neighbor

gene id symbol gene type direction distance location
b4galt4 b4galt4 coding downstream 4602 22107756 ~ 22115080 (-)
arhgap31 arhgap31 coding downstream 17102 22090701 ~ 22102580 (-)
LOC120544600 wasf3,LOC103353329,LOC102197960,LOC102297875,LOC100692077 coding downstream 76400 22036875 ~ 22043282 (-)
LOC120544462 LOC103141584,LOC106952452,LOC103353330,LOC102233759,LOC101165416,LOC107104603,LOC108236878,LOC106526133 coding downstream 83085 22030294 ~ 22036597 (-)
LOC120543538 LOC103353331,LOC100691809 coding downstream 91665 22020956 ~ 22028017 (-)
cdc23 cdc23,LOC102777673 coding upstream 17726 22143765 ~ 22150095 (-)
LOC120544203 gfra3,LOC103353320,LOC102777392 coding upstream 60680 22186719 ~ 22209407 (-)
neu3.1 neu3,neu3a,LOC104941831,LOC101487017,LOC102203440 coding upstream 297935 22423974 ~ 22427017 (-)
spag7 spag7 coding upstream 321499 22447538 ~ 22452177 (-)
LOC120543725 capn6,capn5 coding upstream 386322 22512361 ~ 22523557 (-)
G167579 LOC101469595,LOC102299651 non-coding downstream 104004 22012699 ~ 22015678 (-)
G167591 NA non-coding downstream 125216 21990946 ~ 21994466 (-)
G167590 LOC103353336 non-coding downstream 132195 21986619 ~ 21987487 (-)
G167580 NA non-coding downstream 181742 21937693 ~ 21937940 (-)
G167515 sms non-coding downstream 274999 21844151 ~ 21844683 (-)
G167678 NA non-coding upstream 171819 22297858 ~ 22333330 (-)
G167690 LOC106603099,LOC105009281 non-coding upstream 250218 22376257 ~ 22376520 (-)
G167691 ephb4,LOC104941839,LOC102775650 non-coding upstream 250576 22376615 ~ 22377167 (-)
G167692 NA non-coding upstream 251179 22377218 ~ 22377446 (-)
G167693 NA non-coding upstream 251627 22377666 ~ 22377934 (-)
G167589 prdx4,LOC101470355 other downstream 121034 21996959 ~ 21998648 (-)
LOC120543962 LOC103368266 other downstream 255938 21844697 ~ 21863744 (-)
brd8a brd8,LOC104924599 other downstream 377858 21722318 ~ 21741824 (-)
G167416 NA other downstream 535500 21574218 ~ 21584182 (-)
snrnp35 snrnp35,LOC102792111 other downstream 1029235 21073053 ~ 21090447 (-)
zbtb20 zbtb20 other upstream 92021 22218060 ~ 22250378 (-)
chrdl2 chrdl2,LOC102798861 other upstream 314272 22440311 ~ 22446756 (-)
mepcea mepce,LOC103353310,LOC101485584 other upstream 334492 22460531 ~ 22468616 (-)
G167902 NA other upstream 683675 22809714 ~ 22810452 (-)
zmp:0000001168 sipa1 other upstream 753677 22879716 ~ 22912915 (-)

Expression


Co-expression Network