nectin3b (nectin3,LOC103363279,LOC100689882,LOC102788848,LOC102195880,LOC101479710)


Basic Information

Item Value
gene id nectin3b
gene name nectin3,LOC103363279,LOC100689882,LOC102788848,LOC102195880,LOC101479710
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 24195602 ~ 24223611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777243.1
GCAGTTCGGAGTTGTTGCTGAGGAGGTTCCACTGTTCAGCACATACCGTTAAATTGGCATGCATCCTACGCTTGGGTCCTGAGTAGCAGGAGACTACActgattttgaaaatgttaccGTCTTATCACCGGAGTTACCTTGGACAGCAGGGCAGGGTCGCTTTATTTCACCTTTTGTGCAGTATTACAGGTGTTTGGGGCAGTCAGGTGGTGGTGCCTCAGAGGGTGAATGCTGTGTTGGGGAAGAATGTGACATTAGAGTGCAGAGTGGAGGTGGGCACAAACCTTACTCTTACTCAGAGTTCCTGGGAGCGCCGTCTGCCTTCAGGCTCTGTCACAGTGGCTGTCTACAACCCACGGTATGGCATCTCTATCCCTCCAGAGTTTATTCATCGCTTGTATTTTCGCTCACCTTCCTCGCATGATGCCACCATTGTCCTGGGAAACGTAGGCTTTGCTGACGTCGGGATCTATACCTGTAAAGTTGCCACATTTCCTCTAGGAAACACTCAAGCCTCCACTACTGTCAATGTACTCGTGGAGCCGAAAGTCTATGTGTCTGCAGGTTCAACTGCCCTGATCGACGGTGGCAACGATACCGTGGTGGCCACCTGTATTGCTGAGCGGGCCCGGCCCCCTGCTGAGGTGTCCTGGGAGTCCAACCTTTTTGGCCAGTCAGAAGTGCAGCTATTTGACGAAGCCAACGGCACAACCAGCACACAAGTGAGCTACCTCTGGCAGCCCACACGTCACGTCCAGGGCCACACACTCACCTGTGTGGTCCGCCACCCGGCTCTGCAGAGTGACTTCAGGATCCCCTACCAGCTCAATGTGCAGTttGCTCCTGATATCTCTGTTGTGGGCTATGATGGAGACTGGTATGTGGGTCGGGAAAATGTTCAAATGACGTGCAAAGCCAACGCAAACCCACCGGCTAATCACTTCAGATGGATCAGATTGGACAGTGAAATGCCAGCAGGGGTGGAAATCATGAACAGCACTTTGCTCTTCCTGCGTCCCCTCCAGCGGAATGACTCTGGAGTTTACAGGTGTGAGGTTGCCAATGACATCAACCTCCGCAGTCGGGATGTGCGCATTCTCATACAAGATCCTCCCACCATGCCTTCCACCATTACTGCTCCTGTCCTAACTGGCTCTGCCTCATCCACCTTAGTCGATGATAAGGGACATGTTCTTCTCAGCTCCCCCACACTTGAAGCCCTACCTGAGAGTAATCTTGGTTCCATAGTGGGTGGGGCCGTGGGCGGGGCCTTGTtcctgctactgctgctgtctCTGGTTGGCGTGTGTTACCTACGGAAACAGCAAACCTTCCACGGCAACTACTACACCAAGCAGTACCTGGGCCCCAATGACCTCCAGAAAGCCCCCACGCAGCATGAGCTCCACCCTACCAAAGCTGGCAGCAGCTCGCACCATCAGGACCACGACCGAGAGGAGTGGGGCGACCGCCAGCTCAAACTTGAGCGTGACCGTCGTCACCTTAGCAACTTCAACGGCGAGGAGTATCCCTCTAATGGCTACACGAGGGCAATGAGGGAGAGCAGTCACCACAGCCATCAGCAGAATCACCATTGTGAACACGCACAGTATTCTAGTCCACAGCAGGCCAGACATGCTAGATACCCTCATTCACCTAAACCACAGGGAAACGGCTCCCCCTACCTCTCAGATGACTGCTACGATAGCGGGCCCGAGGGGGACTATGTCTCTCACAAAGACGGGTCTGTCATCTCACGTAGGGAGTGGTACGTTTGACAAGCTACCTGGTCCTCCCGGAGCAGAGATACGACAGAAATCAGAAGGTTTCATATATCAAATTAGGAACAAACGCATCATTTCTCTTTTGTACGCACATGCACACTTCTACTAATCTCAACTCTGTAGTTCCCTAGTTTTGTTCAAGCGTCCTGGTTGATACTTGAGACATGATGTTTCTGTTCTCGATATAGACAGACTGTGGACTGCACAGCCACTTTTGGCAGTCAACATCTACATGCctacagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtggagaCTAACTAAAGTTCATGTATGTGCTGTCTCTGCCTTACTACATAGACTGCCAATGTATTTAGCATCACTAATGTCTTTCAGTTGAGTTGAAGCGCTGGAGGCTCACAGATCACATATGGTTGTTGTAGAAGaaagctttttttgtttctacCGAATCAGCCTTCTCAGGCTATGTGACACTTGCTGacattgtatttgtatgtgttatGGCCTACACTGATTTTGTTTAAAAGACCTCTGACCTCTCAGTATGAGGGGCTGGTATTCAAGAATGGTACAAACCCGTTGACGGAACGTAAATCCATTAAATTCAGAGGGTTGCCGGTCCTTTTTTCCAAATATCAGTAGGACACAGTAGAGGCATGTAggctaatttaaaaaatgaattatcCCACTTAGAAGTCAGAATAACTTCATGACTGATGATCTCTCTACACTGATTCATAGTCATAAAATGTGTTGCACTGCCTTTTGCAAAACTTTATAATGGACAACCACATCATTTGTTTTCTACTAAAAATGTATACCTGTTATGTAACTTACAATGATGGGAGACTTGTGCGCTTGAGGACTTGACCGCCAACATCCTAATGTTCTTTAACACTTACTGGCTTAGAGTGGGAACCTTCAGAGCATTTCTGCTGTAAGACCTTAGCTCATCTTTTGTTtccaggagggagggagggagggagggaaggaggacgACAAGAGGACAAGAAGGGATGTCTGTATGAGTGAGGCACCAGCAATGTATCACCAGACTGGGTTTATCAAAGAGTCAAGCCTCAATATGCAAATTTGCTACAAAAGTCTGCAAGTTGGATAAGCTGGAATAATATTACTTCTGTTAACATTTGTgtgatttattgatttttggGAAGTGTTTCAAGTTGGGTGTCCTCTTGATGTAGCCACAAACACATTCTACTGTTGTCTACCAGATGGTAACGGATGTGTTTGAGAGTTTGCACTCTAGCACTAACCCAGAACTCTTGGAAATTCAAGAGTGCTATCAGCAGGGACTTGTTGAAAGCGGGCTACTGTATGGCAGCCACCATACGCTGGTCTCCTAGTCACAGTATTTTGTTATACAAAGAACTCATTCAAAAGTGAAGCCAGTACACACAATGTACTAATTTGACTACTTTGAGTAATCTGTAGAAAAAGACATGGCTGTGTCACAATCTGAGGCATTAAGGCTTATTGTTGCATATCCACGTGTGAAACTGCACACTAATCATGTTCACCAGttgttgtcttttattttttttaaattttttaagcATTTATTATAACTACCAGTATTATGAAATAATACATTATGTAGATAAATCAGGTCATCTGTGATGGATGTGCTGTCACTGTCGCCAGTGGTTATCAAAGCCACAGCGCAGTGCTTACTCGTCAGATGAGACAGACAATATTTTGTTGCACTGATCATTAAAGCGTTCATTCATAATTTTCCTTTTGAATATCTataaaacacctttttttttcaaatgaattTCTGGCTGGGTTTACAATTAAATCTTAAATTTGATTGCTAATCAAGACTCTCAAACGTTGCAGGACTTACCAAGTACTGTGATTGAACTGAGGAATTTACATATCTGTGTCATTGGGCTGCGGCCCCAATAGTTCAGGTGTTGGATAAAGGTACTTTAGATTTAAAGATGAATTTCAGTTTTTGTAGGTGATAAAATACACCAAACAGCATGGAGGAGATCTACCAATTTCTTTCATGTACACCAGTGTTTGTGATTATATGCCAACTTTAGTAGTATGGTCACATATACAATATTTGCTGCAAGATGCCAAATATTTGAACTTGTATGTATAAATATGATGACAGTCGCACATAAGTATTGCGGACTATCTAACAACTGATTATAAGCTTATATAAAATGTATCACTGTTGTATACAGGGTCTTGTAGCCTGAAATAGAAGTGAAAAGATGCTTTAGGCCACTTTAATATTACAGTAACAGTCGTCAAAATGGGAATTAGTTATATAGCTTATGAACCCTCACTACTTTTTTGTCGGAGTGTGAATTTTGTGCAGTGAATAGGCTGCAATTCTCATAGTGAGATTTGATAATGTGCCACTGTTAACTTGCAAGCAGAGAAAATGACCCCCATACTGCAGTTTGTGTTGTTTCAACTGTTGTTTCAAATGATGTGCAGTACACCATTTTAATAAGTACCTTAAGTTTTAGTTCACTCGCAATTACATTAACATAATTCCCCAATTACCACTAGTGGTGTACAGAAAGTTTTGGTATCTGTTGCCTAATACACTCTGGATATTCTTCAGAACACACTCTTTCTTTGGTATAATTTAATATCAATGAAAAACATCACCCAAAGAAACCACAACAGTGTTTCTGGAAAATTTCTTTAATGCAATATGTCAATGTCTTGAGctccacaaacaaacaaaatttcCATCCACCTTTTATTGTATTGAAGTGGATGTAATGAAATCTGTGTAAATTTGACAAACCTGGGTTAATCTAAAACTATCTGCATTATTTCATACCGCTTCATGCAAGTCAAAACGTGTTTCTTAGTCATTTGGGTGAGCCGACCCTTTTAATGGGAGTGCCCAAACTGAAGTGTACAGGTGGCAATTTGTGAACCAGAAAACCTCATTTAGATTGCTGAATTAAAACTAATGTTTTGGTGCTGGGCGTTCTGCTGATGCCTATTCTTTCTGCCTTTCTGGTCACTTTAACATAAATGCAGAGAATAACAGGAAGCACGGCAGACTAACCCCTTCTTGTGTTTGCTTCTATGCACTAAGACGGAAATTCCACTAATCAATATAAAATTTTTGCTTGACTCGTCAGTTTGCATCCTGGATTAATGAAGTTCTTTTGTACTGTGACATTTTGTATAAAGATCAGTCATCAATATATTTACCTTCAGCAATGTCCTTCACTTTGGGTTGAGAAATACAACTAGTGCCTTAGATACATAGAAGAAATTTTAGTGTTTTTCATTGTTTACTTATGGATCTAAGAACCTGTTTTGTTGCTCTGTGAGATTTATTTGttgcctcttttttttgttttctccatACTGTGTCAGGAGGACTCGTTGTGCCATATTATACATAACTTTTCTGCCCGTTATCATAACCGTTAATGACTCAGTATACTGTATTTGCAAACCTAGatgcattaaaacacacacacacaaaaagacaaagcTTGAATGAATGTTGATGTGGAATTAGTTAGAGCAGTTCACAAGTACTGTATCTGTCAGGGGTTTATGGTTTCTGTAGAATCACTGTTGTTCAAAGAGCTGAAGAATTAACTTTAGTCTCACATTGTCAATGAAAAGCACCTTGTggtcatgtgttgttttttttgtatataaacAGAAGAAAATGTAAGTTTctggaagggggaaaaaaaaatatttatgtcgGTGACAACAGTGAAGCATTATTTTGTCAATCTTTTTGAGATACTTCAATAGTTCAATAAAGCACCTTAGCACCTGTGA
>XM_039777244.1
GCAGTTCGGAGTTGTTGCTGAGGAGGTTCCACTGTTCAGCACATACCGTTAAATTGGCATGCATCCTACGCTTGGGTCCTGAGTAGCAGGAGACTACActgattttgaaaatgttaccGTCTTATCACCGGAGTTACCTTGGACAGCAGGGCAGGGTCGCTTTATTTCACCTTTTGTGCAGTATTACAGGTGTTTGGGGCAGTCAGGTGGTGGTGCCTCAGAGGGTGAATGCTGTGTTGGGGAAGAATGTGACATTAGAGTGCAGAGTGGAGGTGGGCACAAACCTTACTCTTACTCAGAGTTCCTGGGAGCGCCGTCTGCCTTCAGGCTCTGTCACAGTGGCTGTCTACAACCCACGGTATGGCATCTCTATCCCTCCAGAGTTTATTCATCGCTTGTATTTTCGCTCACCTTCCTCGCATGATGCCACCATTGTCCTGGGAAACGTAGGCTTTGCTGACGTCGGGATCTATACCTGTAAAGTTGCCACATTTCCTCTAGGAAACACTCAAGCCTCCACTACTGTCAATGTACTCGTGGAGCCGAAAGTCTATGTGTCTGCAGGTTCAACTGCCCTGATCGACGGTGGCAACGATACCGTGGTGGCCACCTGTATTGCTGAGCGGGCCCGGCCCCCTGCTGAGGTGTCCTGGGAGTCCAACCTTTTTGGCCAGTCAGAAGTGCAGCTATTTGACGAAGCCAACGGCACAACCAGCACACAAGTGAGCTACCTCTGGCAGCCCACACGTCACGTCCAGGGCCACACACTCACCTGTGTGGTCCGCCACCCGGCTCTGCAGAGTGACTTCAGGATCCCCTACCAGCTCAATGTGCAGTttGCTCCTGATATCTCTGTTGTGGGCTATGATGGAGACTGGTATGTGGGTCGGGAAAATGTTCAAATGACGTGCAAAGCCAACGCAAACCCACCGGCTAATCACTTCAGATGGATCAGATTGGACAGTGAAATGCCAGCAGGGGTGGAAATCATGAACAGCACTTTGCTCTTCCTGCGTCCCCTCCAGCGGAATGACTCTGGAGTTTACAGGTGTGAGGTTGCCAATGACATCAACCTCCGCAGTCGGGATGTGCGCATTCTCATACAAGACCAGTCCCAAGTGAAGAGGTCAAACTCCATCGCTGTGGCCGGAGCTGTGATGGGCGCAGTCCTCGCTCTCTTCCTCATCACTGTCTTCCTTATCGTGATCCTCACCGCTCGCAAAGCCCCGCCACCAGCTTTCGCTGACAAAGTGATTGACCTTCCTCCAACACACAAGCCGCCTCCTCCCTACTCTGAGAGAGCACCGGCTGTTCCCCTGGGTGTCCACGCATCACAAGTGGCCTGGCTCTGTCAGACTCGCAGGGCAGACCGCAGTCACGAGCTGACTGACAGACAGCACCCACTAACAACAAGGCCAGGACCACGGGCAACGCAAAGCCCCACCCAGCAACTCTCCCGCCTGCAGTGGGTGTGTCATCAGAGTGGGACAGACCGGGTGTACATCAACCACCGTGAACACTATGTGTGACAGACATCCTGAACACAGTCCGCCAAGCACCTGGCAGTCATTCACTCAAGTGTACAGGCTTCACCTGATTCACTGAGCCATCAATCCAGAGGAGGGAACAGCTGGCAGCCTTAGAGGGCAACAGCTCCTTTATTTCACAtcgttaaatgttttttgtctgAAAGGAGTTGTTCAATGTTCTtactgagagttagatgagatgaTTGATACCTCTCTTGCGTCTGTATGAAGCTacagtttagcttagcacaaagactggctCCATCCAAACGTCACAACAGTATCATAGTTGCATCTCTAAAACCTGGAATAGTTCAAACCCCCCGTAAAATcacaaattgtgtttttacAAACCAgtctagctgtttccccttgcttccagtctttgtgctaagctaactgcctgctggctctagcttcatatttactgtacagacattAAAGTGGTATCGCCCTTCTTATTTAACTCTCTGCAAAAAaagtgcatttcccaaaatCTTGAACTACTCcttcaattcttttttttctttttttctttctgtatttATCAGTATGTAGTGTTTGATATCACTTAGGATACCAAAAAGATGCTTTAGAAATCACATCTGTCCTCTAATCAGCGTGTGCACTATACTGTACATGAGTAGAAAACAGCTGAGGGTCATAGTAATCCACTGAAATCCAAACactgttttcctttttcttttatcagAGAGGGTACCACAAAGCATAAATCACAGACTCGTTCTCAGGCATATCACCATGAAGGGATTAattaagatatttcagtcccAGTTCTGTAATTTGCTGTAATGTTATAACACGATGCTTTTTGGCAGCATAAACTGTATaatttgtaaatgtgtaaatgttgcCTCTGTGTCACTCCGTGTAATAATGTAGAGTTGTAACCTCCTACTAATCAGGGAAACTGACACATCACTGATGTCAGTACCttttaaatatactgtagaaaAATAA

Function

symbol description
nectin3 Enables cell adhesion molecule binding activity and identical protein binding activity. Predicted to be involved in establishment of protein localization to plasma membrane; heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within several processes, including camera-type eye morphogenesis; fertilization; and protein localization to cell junction. Predicted to be located in cell-cell junction and plasma membrane. Predicted to be active in adherens junction; apical junction complex; and hippocampal mossy fiber to CA3 synapse. Predicted to be integral component of postsynaptic density membrane.

NR:

description
nectin-3-like protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777243.1 True 5713 mRNA 0.43 6 24195602 24214394
XM_039777244.1 False 2510 mRNA 0.48 8 24195602 24223611

Neighbor

gene id symbol gene type direction distance location
LOC120575602 NA coding upstream 4434 24188076 ~ 24191168 (+)
ppme1 ppme1 coding upstream 8134 24182076 ~ 24187468 (+)
dnajb13 dnajb13 coding upstream 24360 24167029 ~ 24171242 (+)
LOC120575597 rab6a coding upstream 29675 24156450 ~ 24165927 (+)
pafah1b2 pafah1b2 coding upstream 88982 24101164 ~ 24106620 (+)
ppm1nb LOC103366298,LOC106516403,LOC103475725 coding downstream 13998 24237609 ~ 24243371 (+)
ccdc61 ccdc61 coding downstream 28950 24252561 ~ 24259956 (+)
pls3 pls3,LOC103366302,LOC107087894 coding downstream 62102 24285713 ~ 24302756 (+)
cnga2b cnga2 coding downstream 83040 24306651 ~ 24312539 (+)
LOC120544446 LOC104945802 coding downstream 102789 24326400 ~ 24333721 (+)
G168360 NA non-coding upstream 17063 24175177 ~ 24178539 (+)
G168318 NA non-coding upstream 101803 24090275 ~ 24093799 (+)
G168311 dscaml1,LOC107087877,LOC103395551,LOC106534979,LOC108247600,LOC105929366 non-coding upstream 162384 24032761 ~ 24033218 (+)
G168301 NA non-coding upstream 181656 24013734 ~ 24013946 (+)
G168291 LOC104954468,LOC103363262 non-coding upstream 209065 23985682 ~ 23986537 (+)
G168383 NA non-coding downstream 1603 24225214 ~ 24228577 (+)
G168460 NA non-coding downstream 171831 24395442 ~ 24398629 (+)
LOC120543831 clg10hxorf57,LOC103366308,LOC102289771 non-coding downstream 181504 24405115 ~ 24406976 (+)
G168473 NA non-coding downstream 214958 24438569 ~ 24441195 (+)
G168512 NA non-coding downstream 299063 24522674 ~ 24523302 (+)
G168226 thoc2 other upstream 267121 23927342 ~ 23928481 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 277125 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1549776 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 1773548 22394516 ~ 22422054 (+)
kif20a kif20a,LOC102778170 other upstream 2051403 22134507 ~ 22144199 (+)
gab3 NA other downstream 186694 24410305 ~ 24420345 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 762854 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 1615793 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 1644543 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 1776452 26000063 ~ 26223445 (+)

Expression


Co-expression Network