LOC120545301


Basic Information

Item Value
gene id LOC120545301
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 35356398 ~ 35891299 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU244203
gatggtgtgtgtctcttcctgtctccacaGTGTGATTTAAAGTCAGCTTCTTCATCTCTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACCTCAAGATGGCTGCAACACCAAGAAAAAGATGGAGCAAAGAAAATCCTCCTGATCTCTCTGAATTAATGAACTCACTTAAAGAACATGCATCTTCATTCATCAGAGAGTTTGGCACCAGAGAACAGAAGATGAGAGAGGTTGTTAGAGAGTTTAGGGAGATCGCTGATGAAGTCAGAAAGATGCAGGAGACAACAGGTAGAATCAGAACAGTAGGAGCTGTTGCTGGAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTGGGAGTAGGACTTGCGGTCCTTGCAGCTCCATTCACTGGGGGGGTAGTTTATTAGCAGCAGTAGGAGGAGGAGCTGTGGTTGTTGGtgcaaatgtaacaaaaacaatgaaagcGAACAGAAGTGTAAAGAAAGTAGAAGAGCTGGGGAAAGAGTTCATGGAGATGGTTGAACCGCTGAAGAACGACCTGGAAGAAATTAAGAGGACAGGTGAGAAGTTGGAGCAAAGATCAGCTGGAGATCAGGCTGGAAAGACTCTGACAGACATGGAGGAGTTTCAGAAGATTCTGAGACGAGTTTCTGAACTGGCAAGAAGGAGTGAAGAAGTTTTGGTTTTTCACTGCAACACTGATGGGAATTATTCAGGGCTTGATATTGCTCCTTGTGAACATCATCAGAGTCACAGCGACCCCTGAAGAGGTTGAAAAGTTAAGAAACTCCATCTCCCAGTCAGCTGATCGCTGTCAGGAGGTCGTTGTCAAGTTTGATCAGATGAAGAAAGAACTCAAAGACTTCactgaaaaataaagatagaagcAGCAGGAGAAGAGAAAGACTGGTTAACACTGAAACTGCTGACTACCTGTTAGTGTTTGATCATTATCTAACATACTGGACTCATAGTAACTGAATCAGATGATCAATAATACTTTATCATATTTCATATGTTGGACTGTTGAACACTGAGactgaattattgtatttttggttgatacgcctcttcaacattgcgtggacgTTTAGGACAGTGTCtgaggagtggcagaccggggggGGGTTGTAGGAGAGTTTAGGGAGAACGCTGATGAAGTCAGAGAGACCCAGGAGGGACCAGGGACAGATAGAAGCTGCAGTTTGTAGAAAAGGCCTTGTTTCATAATTTCTCACTAAATCTGCAGTTTGAGATATTGAACTTTGGGACACATATATTCCTCTGATCCTAATTATCAAAACCAAAAACTCTTTCTTATAACTCTGACTGAAACATGATGTCACCGTGTTGGACTCAGACCTAAAAGGTCAAAGATAACCCAGGGTGGATAAACTGCAGTTTGTCATGTGACCAATGACGGAGCTACACCGGGGCTAGTCTCTcatgtccagaccttcctccatgtccagaccttcctccacagcgctgtggaggaaggtctctCATGTCCAGACCTCCCCATGTTGAGTAAGATGTTCCCCCCGATGATATGATATATGTCAACCCTGTACCATGACTGAACCAACcaccaaaccaaaaaaactGACCAGCCATCCAGGAATTGTCCCGGTCCTCCtgattagccaatcagagcctgTCTCTGAAACTATGTTTTGTAAACTCTGTAACATTAACCTGACTGAACATGTTATGCTTTATTGCTCCAtcttaatagttttttttgcaaatgttaTAAATCAATGTGATGCTCTGAACTGTATTATTTAACCTACATGAGgtaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctgttgGCGCTCCTGTGTTTTTGCTAAACTGCTTGTTTTTAATTACTATTGACACCACATCATCTATAGTGctgttacatttctttttttaaatagttatttttataattgccatacctgcccagggactacaggtggaaattaacaattgttgctataacctggcccaagacatattctcttgtttaacaagtttaatgt
>TU244208
TGCAGTTTGTAGAAAAGGCCTTGTTTCTTCATAATTTCTCACTAAATCTGCAGTTTGAGATATAGAACTTTGGGACACACATATTCCTCTGATCCTAATTATCAAAACCAAAACTCTTTCTTATAACTCTGACTGAAACATGATGTAACCGTGATGGACTCTGACCTAAAAGGTCAAAGATAACCCAGGGTGGATAAACTGCAGTTTGTCATGTGACCAATGACAGAGCTACACCGGGGCTAgtctctCATGTCCAGACCTTCCCGTGTTGAGTAAGATGTTCCCCCCGGTGATATGATATATGTCAACCCTGTACCATGACTGAACCAACcaccaaaccaaaaaaacagacCAGCCCACCGGGACCGGTCCTCCtgattagccaatcagagcctgTCTCTGAAAGTATGTTTTGTAAACTCTGTAACATTAACCTGACTGAACATGTTATGCTTTATTGCTCCATCTTAATagtttttttgcaaatgttaTAAATCAATATGATGCCCTGAACTGTATTATTTAGCCTACATGAggtaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctgttgGCGCTCCTGTGTTTTTGCTAAACTGCTTGTTTTTAATTACTATTGACACCACATCATCTATAGTGctgttacatttctttttttaaatagttatttttataattgccatacctgcccagggactacaggtggaaattaacaattgttgctataacctggcccaagacatattctcttgtttaacaagtttaatgt
>TU244215
gatggtgtgtgtctcttcctgtctccacaGTGTGATTTAAAGTCAGCTTCTTCATCTCTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACCTCAAGATGGCTGCAACACCAAGAAAAAGATGGAGCAAAGAAAATCCTCCTGATCTCTCTGAATTAATGAACTCACTTAAAGAACATGCATCTTCATTCATCAGAGAGTTTGGCACCAGAGAACAGAAGATGAGAGAGGTTGTTAGAGAGTTTAGGGAGATCGCTGATGAAGTCAGAAAGATGCAGGAGACAACAGGTAGAATCAGAACAGTAGGAGCTGTTGCTGGAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTGGGAGTAGGACTTGCGGTCCTTGCAGCTCCATTCACTGGGGGGGTAGTTTATTAGCAGCAGTAGGAGGAGGAGCTGTGGTTGTTGGtgcaaatgtaacaaaaacaatgaaagcGAACAGAAGTGTAAAGAAAGTAGAAGAGCTGGGGAAAGAGTTCATGGAGATGGTTGAACCGCTGAAGAACGACCTGGAAGAAATTAAGAGGACAGGTGAGAAGTTGGAGCAAAGATCAGCTGGAGATCAGGCTGGAAAGACTCTGACAGACATGGAGGAGTTTCAGAAGATTCTGAGACGAGTTTCTGAACTGGCAAGAAGGAGTGAAGAAGTTTTGGTTTTTCACTGCAACACTGATGGGAATTATTCAGGGCTTGATATTGCTCCTTGTGAACATCATCAGAGTCACAGCGACCCCTGAAGAGGTTGAAAAGTTAAGAAACTCCATCTCCCAGTCAGCTGATCGCTGTCAGGAGGTCGTTGTCAAGTTTGATCAGATGAAGAAAGAACTCAAAGACTTCactgaaaaataaagatagaagcAGCAGGAGAAGAGAAAGACTGGTTAACACTGAAACTGCTGACTACCTGTTAGTGTTTGATCATTATCTAACATACTGGACTCATAGTAACTGAATCAGATGATCAATAATACTTTATCATATTTCATATGTTGGACTGTTGAACACTGAGactgaattattgtatttttggttgatacgcctcttcaacattgcgtggacgTTTAGGACAGTGTCtgaggagtggcagaccggggggGGGTTGTAGGAGAGTTTAGGGAGAACGCTGATGAAGTCAGAGAGACCCAGGAGGGACCAGGGACAGATAGAAGCTGCAGTTTGTAGAAAAGGCCTTGTTTCATAATTTCTCACTAAATCTGCAGTTTGAGATATTGAACTTTGGGACACATATATTCCTCTGATCCTAATTATCAAAACCAAAAACTCTTTCTTATAACTCTGACTGAAACATGATGTCACCGTGTTGGACTCAGACCTAAAAGGTCAAAGATAACCCAGGGTGGATAAACTGCAGTTTGTCATGTGACCAATGACGGAGCTACACCGGGGCTAGTCTCTcatgtccagaccttcctccacagcgctgtggaggaaggtctcccatgtccagaccttcctccacagcgctgtggaggaaggtctctCATGTCCAGACCTCCCCATGTTGAGTAAGATGTTCCCCCCGATGATATGATATATGTCAACCCTGTACCATGACTGAACCAACcaccaaaccaaaaaaactGACCAGCCATCCAGGAATTGTCCCGGTCCTCCtgattagccaatcagagcctgTCTCTGAAAGTATGTTTTGTAAACTCTGTAACATTAACCTGACTGAACATGTTATGCTTTATTGCTCCATCT
>TU244218
gatggtgtgtgtctcttcctgtctccacaGTGTGATTTAAAGTCAGCTTCTTCATCTCTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACCTCAAGATGGCTGCAACACCAAGAAAAAGATGGAGCAAAGAAAATCCTCCTGATCTCTCTGAATTAATGAACTCACTTAAAGAACATGCATCTTCATTCATCAGAGAGTTTGGCACCAGAGAACAGAAGATGAGAGAGGTTGTTAGAGAGTTTAGGGAGATCGCTGATGAAGTCAGAAAGATGCAGGAGACAACAGGTAGAATCAGAACAGTAGGAGCTGTTGCTGGAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTGGGAGTAGGACTTGCGGTCCTTGCAGCTCCATTCACTGGGGGGGTAGTTTATTAGCAGCAGTAGGAGGAGGAGCTGTGGTTGTTGGtgcaaatgtaacaaaaacaatgaaagcGAACAGAAGTGTAAAGAAAGTAGAAGAGCTGGGGAAAGAGTTCATGGAGATGGTTGAACCGCTGAAGAACGACCTGGAAGAAATTAAGAGGACAGGTGAGAAGTTGGAGCAAAGATCAGCTGGAGATCAGGCTGGAAAGACTCTGACAGACATGGAGGAGTTTCAGAAGATTCTGAGACGAGTTTCTGAACTGGCAAGAAGGAGTGAAGAAGTTTTGGTTTTTCACTGCAACACTGATGGGAATTATTCAGGGCTTGATATTGCTCCTTGTGAACATCATCAGAGTCACAGCGACCCCTGAAGAGGTTGAAAAGTTAAGAAACTCCATCTCCCAGTCAGCTGATCGCTGTCAGGAGGTCGTTGTCAAGTTTGATCAGATGAAGAAAGAACTCAAAGACTTCactgaaaaataaagatagaagcAGCAGGAGAAGAGAAAGACTGGTTAACACTGAAACTGCTGACTACCTGTTAGTGTTTGATCATTATCTAACATACTGGACTCATAGTAACTGAATCAGATGATCAATAATACTTTATCATATTTCATATGTTGGACTGTTGAACACTGAGactgaattattgtatttttggttgatacgcctcttcaacattgcgtggacgTTTAGGACAGTGTCtgaggagtggcagaccggggggGGGTTGTAGGAGAGTTTAGGGAGAACGCTGATGAAGTCAGAGAGACCCAGGAGGGACCAGGGACAGATAGAAGCTGCAGTTTGTAGAAAAGGCCTTGTTTCATAATTTCTCACTAAATCTGCAGTTTGAGATATTGAACTTTGGGACACATATATTCCTCTGATCCTAATTATCAAAACCAAAAACTCTTTCTTATAACTCTGACTGAAACATGATGTCACCGTGTTGGACTCAGACCTAAAAGGTCAAAGATAACCCAGGGTGGATAAACTGCAGTTTGTCATGTGACCAATGACGGAGCTACACCGGGGCTAGTCTCTcatgtccagaccttcctccacagcgctgtggaggaaggtctctCATGTCCAGACCTCCCTGTGTTGATTAAGATGTTCCCCCCGGTGATATGATATATGTCAACCCTGTACCATGACTGAACCAACcaccaaaccaaaaaaactGACCAGCCCAAAGGGAGTTGTCCCGGTCCTCCtgattagccaatcagagcctgTCTCTGAAAGTATGTTTTATAAACTCTGTAACATTAATCTGACTGAACATGTTATGCTTTATTGCTCC
>TU244224
gatggtgtgtgtctcttcctgtctccacaGTGTGATTTAAAGTCAGCTTCTTCATCTCTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACCTCAAGATGGCTGCAACACCAAGAAAAAGATGGAGCAAAGAAAATCCTCCTGATCTCTCTGAATTAATGAACTCACTTAAAGAACATGCATCTTCATTCATCAGAGAGTTTGGCACCAGAGAACAGAAGATGAGAGAGGTTGTTAGAGAGTTTAGGGAGATCGCTGATGAAGTCAGAAAGATGCAGGAGACAACAGGTAGAATCAGAACAGTAGGAGCTGTTGCTGGAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTAGGAATAGGTGTAGGAGTGGGAGTAGGACTTGCGGTCCTTGCAGCTCCATTCACTGGGGGGGTAGTTTATTAGCAGCAGTAGGAGGAGGAGCTGTGGTTGTTGGtgcaaatgtaacaaaaacaatgaaagcGAACAGAAGTGTAAAGAAAGTAGAAGAGCTGGGGAAAGAGTTCATGGAGATGGTTGAACCGCTGAAGAACGACCTGGAAGAAATTAAGAGGACAGGTGAGAAGTTGGAGCAAAGATCAGCTGGAGATCAGGCTGGAAAGACTCTGACAGACATGGAGGAGTTTCAGAAGATTCTGAGACGAGTTTCTGAACTGGCAAGAAGGAGTGAAGAAGTTTTGGTTTTTCACTGCAACACTGATGGGAATTATTCAGGGCTTGATATTGCTCCTTGTGAACATCATCAGAGTCACAGCGACCCCTGAAGAGGATAAAAAGTTAAGAAACTCCATCATCCAGTCAGCTGTTCGCTGTCAGGAGGTCGTTGTCAAGTTTGATCAGATGAAGACAGAACTCAAAGACTTCactgaaaaataaagatagaagcAGCAGGAGAAGAGAAAGACTGGTTCACACTGAAACTGCTGACTACCTGTTAGTGTTTGATCATTATCTAACATACTGGACTCATAGTAACTGAATCAGATGATCAATAATACTTTATCATATTTCATATGTTGGACTGTGGAACACTGAGactgaattattgtatttttggttgacacgcctcttcaacattgtgtGGACGTTTAGGACAGTGCCTGAGGAGACCGGGGTGTAGGAGAGTTTAGGGAGAACGCTGATGAAGTCAGAGAGACCCAGGAGGGACCAGGGACATGGGTTAGAGATAGAAGCTGCAGTTTGTAGAAAAGGCCTTGTTTCATCATAAGTTCTCACTAAATCTGCAGTTTGAGATATAGAACTTAAAGTTTGAACACATATATTCCTCTGGTCCTAATTATCAACAAAAACTCTTTCTTATAACTCTGACTGAAACATGATGTCACCGTGTTGGACTCTGACCTAAAAGGTCAAAGATAACCCAGGGTGGATAAACTGCAGTTTGTCATGTGACCAATGACAGCGCTACACCGGGGCTAGTCTCTcatgtccagaccttcctccatgtccagaccttcctccacagcgctgtggaggaaggtctcccatgtccagaccttcctccacag
>XM_039779541.1
tgtgtgtgtgtgtgtgtattctgatggtgtgtgtctcttcctgtctccacaGTGTGATTTAAAGTCAGCTTCTTCATCTCTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACATGGAGATGGCTTCAAGACCTAGAAGAAGACGGAGCAGAGACTTCCCTCCTGATTTCTCTGAATTAATGAACACACTTAAAAATCATGCAGCTTCATTCATCAGAGAGTTTGGCAGCAGAGAACAGAAGATGAGAGAGATAGTTAGAGAGTTTAGGGAGATCTCTGATGGAGTCAGAAAGATGCAGGAGATAACAGATAGAGTCAGAACAGTAGGAGCTGTTACTGGAGGAGTAGGAATAGGACTCTCGGTCCTTGCAGCTCTGTTCACTGGGGGGGTTAGTTTAGCAGTTGTACTgttagtagcagcagcaggaggagctgTTACTGGAGCAGGAGGAATAGGACTCTCGTTCCTTGCAGCTATGTTTACTGGGGGGGTTAGTTTAGCAGTAGTACCGTtagcagcagtagcaggaggagctgcagcagcaggaaaAGGTGTGGTTTTTGCTGTAAATGTAACAAAAAGAATGAAAGAGACTGGAAGTGCAAAGAAAGTAGAAGAACTGGGGAAAGAGTTCATGGAGATCGTTGAACCGCTGAAGAAGGACCTGGAAGAAATAAAGAGGACGTGCGAGAAGTTGGAGGAAAGATCAGCTGGAGATCAGGCTGGAATCACTCTGAGAGACATGGAGGGGTTACAGAGGATTCTGACACGAGTTTCTGAACTGGCAGAAAGGAGTGAAGAAGTTGTGTTTGTCACTGCAACACTGATGGGAATTATTCGGTGCTTGATATTGCTCCTTGTGACAATCTTCAGAGTCACAGCGACCCCTGAAGAGGATAAAAAGTTAAGAAACTCCATCATCCAGTCAGCTGTTCGCTGTCAGGAGGTCGTTGTCAAGTTTGATCAGATGAAGAAAGAACTCAAAGACTTCactgaaaaataaagatagaagcAGCAGGAGAAGAGAAAGACTGGTTCACACTGAAACTGCTGACTACCTGTTAGTGTTTGATCATTATCTAACATACTGGACTCATAGTAACTGAATCAGATGATCAATAAAACTTTATCATATTTCATATGTTGGTCTGTTGAACACTGAGactgaattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244203 True 2105 lncRNA 0.43 4 35356398 35891299
TU244208 False 806 lncRNA 0.40 2 35890452 35891299
TU244215 False 1791 lncRNA 0.44 3 35356398 35375430
TU244218 False 1744 lncRNA 0.44 2 35356398 35394784
TU244224 False 1565 lncRNA 0.44 6 35356398 35419997
XM_039779541.1 False 1182 mRNA 0.44 2 35373617 35394127

Neighbor

gene id symbol gene type direction distance location
LOC120545309 NA coding upstream 24439 35280173 ~ 35331959 (+)
LOC120545272 NA coding upstream 124250 35205081 ~ 35232148 (+)
LOC120545273 NA coding upstream 212913 35134471 ~ 35143485 (+)
LOC120545265 man2a1 coding upstream 332616 34986670 ~ 35023782 (+)
LOC120545317 NA coding upstream 407959 34571819 ~ 34948439 (+)
LOC120545287 NA coding downstream 332495 36223794 ~ 36265675 (+)
LOC120545323 NA coding downstream 337001 36228300 ~ 36236912 (+)
LOC120545268 NA coding downstream 471703 36363002 ~ 36381752 (+)
capslb capsl coding downstream 492714 36384013 ~ 36457532 (+)
LOC120545293 NA coding downstream 1194046 37085345 ~ 37090520 (+)
G180315 NA non-coding upstream 25955 35329757 ~ 35330443 (+)
G180285 NA non-coding upstream 290380 35039188 ~ 35066018 (+)
LOC120545338 NA non-coding upstream 306267 35048840 ~ 35050131 (+)
G180266 NA non-coding upstream 314707 35027747 ~ 35041691 (+)
G180280 NA non-coding upstream 334323 34991127 ~ 35022075 (+)
G180379 NA non-coding downstream 53737 35945036 ~ 35991027 (+)
G180387 NA non-coding downstream 118062 36009361 ~ 36010237 (+)
G180406 NA non-coding downstream 197139 36088438 ~ 36120437 (+)
LOC120545344 NA non-coding downstream 224460 36115759 ~ 36116554 (+)
G180409 hsdl2,LOC102790414 non-coding downstream 229360 36120659 ~ 36123008 (+)
G180268 NA other upstream 400432 34953064 ~ 34955966 (+)
G180216 NA other upstream 541488 34807258 ~ 34814910 (+)
G180213 fktn other upstream 552648 34716286 ~ 34803750 (+)
G180201 NA other upstream 790446 34564880 ~ 34565952 (+)
G180199 NA other upstream 796013 34557582 ~ 34560385 (+)
G180382 NA other downstream 78467 35969766 ~ 35973061 (+)
LOC120545305 NA other downstream 157307 36048606 ~ 36060523 (+)
G180410 hsdl2 other downstream 231781 36123080 ~ 36176371 (+)
G180414 NA other downstream 285664 36176963 ~ 36177922 (+)
LOC120545105 ptbp3,LOC106536240 other downstream 429036 36320335 ~ 36327396 (+)

Expression


Co-expression Network