LOC120545328


Basic Information

Item Value
gene id LOC120545328
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 35420516 ~ 35902434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU244280
caccactgatAAATGCTCTTTGGGGGACTTtttgaaattgttgggtcttgtGTTCAGGGCGTTTCCAGTTTAAAGAGAAACGACTCAGAGTTGGTACTTAAAGctgagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagaagacattttcagttcTGCTTCACCTTCATCTCTTCTCCAACAGAGAAACGACTCAGAGGCTGATCAGAACGACAGAGAGAGGACGTGAGGACAGGAGGACTCAGAGCTCAGAGGTGCTGGACCTGCATCAACTTACAgTGTGATTTAAAGTCAGCTTCTTCATCACTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACATGGAGATGGCTGCAGATGAAGACAGAACATCAGAATATATTGTTATAGGAGTAACAGCAGTAGGAATAGGACTCCTGCTCCTTGCAGCTCCGCTCACTAAGGGGACTAGTTTAGCATTAGTAGCATCAGTAGGAGGAATAGTAACATTTGTAGCAGCAAGACAACGAAATAATAGACAATAGAAGAGCTGGGGAAAGACTTCATGGAGATTGTTGAACCGCTGAAGAACAACCTGGAAGAAATAAAGAGGATGTGTGAGAAGTTGGAGCAAAGATCAATGCAAACATGTTTTACATTTTCCTACATAACTCTTTCAATACAACAGAAAAGTCATCTGCTGTTATAAGAAAaatatacagtggtgctcatggGTTATATGAATGCTAAACATTACTAAAAAGatcaaaaatcatcttttggaaattgatcttaatgccttaattaaaaagatgaggaaaaatccaacctttaaggacaccaattttctttgtgaatgaataatgtatcgtgaataaataaataaatgttcttcctttaaatacagggggcataagtcagtacacccctatgttagattcccatagaggcagcaGATGTTTATTAtgaaggccagttatttcatggatcccgGATACTATGCAtactgataaagttcccttggcctttacatcattacatacccttcagattggcatggttttatttcagttagcctaatacctggtttgatttgcattgagaaatgatcttatggaaagtactcCATGCCATCACAATAAACAAGCTTCTATACAAAACATGCTAAACAAGTTCAGCTACAGTTAATAGATGTGAGGAAAgtcttttagttagttttgaagctgacattgggcctcattcaccaatatcttcctaagttttctcttaaatatgttcttacagttttttttcgattgctaaatgacagtgggcacaactggagtcacatgtacaaaactctaactccagtctccacagcagcagttcatgtggaccaaac
>TU244283
AGACGTCTTCATGACTGCCAAGAGAAACGACTCAGAGTTGGTACTTAAAGctgagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagaagacattttcagttcTGCTTCACCTTCATCTCTTCTCCAACAGAGAAACGACTCAGAGGCTGATCAGAACGACAGAGAGAGGACGTGAGGACAGGAGGACTCAGAGCTCAGAGGTGCTGGACCTGCATCAACTTACAggtcagaacacacacacacacacatacacacacacatacacacacacacacacacacacacacacatacagacacacacacacacacatacacacacacacacatacagacac
>XR_005636646.1
CGCAGTTAGTTCATAAGCTGCCTGATGTGTGATTGGTTTCTCTGGTCATGTGATTTCAGAGAAACGACTCAGAGTTGGTACTTAAAGctgagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagaagacattttcagttcTGCTTCACCTTCATCTCTTCTCCAACAGAGAAACGACTCAGAGGCTGATCAGAACGACAGAGAGAGGACGTGAGGACAGGAGGACTCAGAGCTCAGAGGTGCTGGACCTGCATCAACTTACAgTGTGATTTAAAGTCAGCTTCTTCATCACTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACATGGAGATGGCTGCAGATGAAGACAGAACATCAGAATATATTGTTATAGGAGTAACAGCAGTAGGAATAGGACTCCTGCTCCTTGCAGCTCCGCTCACTAAGGGGACTAGTTTAGCATTAGTAGCATCAGTAGGAGGAATAGTAACATTTGTAGCAGCAAGACAACGAAATAATAGACAATAGAAGAGCTGGGGAAAGACTTCATGGAGATTGTTGAACCGCTGAAGAACAACCTGGAAGAAATAAAGAGGATGTGTGAGAA
>XR_005636647.1
GTTTCCAGTTTAAAGAGAAACGACTCAGAGTTGGTACTTAAAGctgagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagaagacattttcagttcTGCTTCACCTTCATCTCTTCTCCAACAGAGAAACGACTCAGAGGCTGATCAGAACGACAGAGAGAGGACGTGAGGACAGGAGGACTCAGAGCTCAGAGGTGCTGGACCTGCATCAACTTACAgTGTGATTTAAAGTCAGCTTCTTCATCACTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACATGGAGATGGCTGCAGATGAAGACAGAACATCAGAATATATTGTTATAGGAGTAACAGCAGTAGGAATAGGACTCCTGCTCCTTGCAGCTCCGCTCACTAAGGGGACTAGTTTAGCATTAGTAGCATCAGTAGGAGGAATAGTAACATTTGTAGCAGCAAGACAACGAAATAATAGACAATAGAAGAGCTGGGGAAAGACTTCATGGAGATTGTTGAACCGCTGAAGAACAACCTGGAAGAAATAAAGAGGATGTGTGAGAA
>XR_005636648.1
AACCCAGCTTGTGTCGCAGTTAGTTCATAAGCTGCCTGATGTGTGATTGGTTTCTCTGGTCATGTGATTTCAGAGAAACGACTCAGAGTTGGTACTTAAAGctgagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagaagacattttcagttcTGCTTCACCTTCATCTCTTCTCCAACAGAGAAACGACTCAGAGGCTGATCAGAACGACAGAGAGAGGACGTGAGGACAGGAGGACTCAGAGCTCAGAGGTGCTGGACCTGCATCAACTTACAgTGTGATTTAAAGTCAGCTTCTTCATCACTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACATGGAGATGGCTGCAGATGAAGACAGAACATCAGAATATATTGTTATAGGAGTAACAGCAGTAGGAATAGGACTCCTGCTCCTTGCAGCTCCGCTCACTAAGGGGACTAGTTTAGCATTAGTAGCATCAGTAGGAGGAATAGTAACATTTGTAGCAGCAAGACAACGAAATAATAGACAATAGAAGAGCTGGGGAAAGACTTCATGGAGATTGTTGAACCGCTGAAGAACAACCTGGAAGAAATAAAGAGGATGTGTGAGAAGTTGGAGCAAAGATCAGCTGGAGATCAGGCTGGAAAGACTCTGACAGACATGGAGGGGTTACAGAGGATTCTGACACGAGTTTCTGAACTGGCAAGAAGGAGTAAAGAACTTTTATCTTTCACTGCAATCCTAATGGGAGATATTCAGGGCATGTTATTGCTCCTTGTGGAAGTCTTCAGAGTCACTGCGACCCCTGAAGAGGATGAAAAGTTAGTAAAGTCCATCATCCAGTCAGCTGATCTCTGTCAGGAGGTCGTTGTCAGGTTTGATCAGATGAAGGAAGAACTCAAAGACTTCACTgaaaaataaagacagaagCAGCAGGAGAAGAGAAAGACTGGTTCACACTGAAACTACTGACTAACTGTTAGTGTTTGATCATTATCTAACATACTGGACTCATAGTAACTGAATCAGATGATCAATAATACTTTATGATATTTCATATGTTGGACTGTTGAACACTGAGactgaattattgtatttttggttgatacgcctcttcaacattgcgtggacgTTTAGGACAGTGTCt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244280 True 1447 lncRNA 0.40 4 35879586 35886491
TU244283 False 418 lncRNA 0.49 4 35420516 35902434
XR_005636646.1 False 674 lncRNA 0.46 3 35879699 35885734
XR_005636647.1 False 630 lncRNA 0.46 4 35879646 35885734
XR_005636648.1 False 1224 lncRNA 0.44 4 35879685 35890355

Neighbor

gene id symbol gene type direction distance location
LOC120545309 NA coding upstream 88557 35280173 ~ 35331959 (+)
LOC120545272 NA coding upstream 188368 35205081 ~ 35232148 (+)
LOC120545273 NA coding upstream 277031 35134471 ~ 35143485 (+)
LOC120545265 man2a1 coding upstream 396734 34986670 ~ 35023782 (+)
si:ch211-202f5.2 NA coding upstream 568912 34850601 ~ 34851604 (+)
LOC120545287 NA coding downstream 321360 36223794 ~ 36265675 (+)
LOC120545323 NA coding downstream 325866 36228300 ~ 36236912 (+)
LOC120545268 NA coding downstream 460568 36363002 ~ 36381752 (+)
capslb capsl coding downstream 481579 36384013 ~ 36457532 (+)
LOC120545293 NA coding downstream 1182911 37085345 ~ 37090520 (+)
G180259 NA non-coding upstream 36132 35380182 ~ 35384384 (+)
G180325 NA non-coding upstream 58903 35361032 ~ 35361613 (+)
G180315 NA non-coding upstream 90073 35329757 ~ 35330443 (+)
G180285 NA non-coding upstream 354498 35039188 ~ 35066018 (+)
LOC120545338 NA non-coding upstream 370385 35048840 ~ 35050131 (+)
G180379 NA non-coding downstream 42602 35945036 ~ 35991027 (+)
G180387 NA non-coding downstream 106927 36009361 ~ 36010237 (+)
G180406 NA non-coding downstream 186004 36088438 ~ 36120437 (+)
LOC120545344 NA non-coding downstream 213325 36115759 ~ 36116554 (+)
G180409 hsdl2,LOC102790414 non-coding downstream 218225 36120659 ~ 36123008 (+)
G180268 NA other upstream 464550 34953064 ~ 34955966 (+)
G180216 NA other upstream 605606 34807258 ~ 34814910 (+)
G180213 fktn other upstream 616766 34716286 ~ 34803750 (+)
G180201 NA other upstream 854564 34564880 ~ 34565952 (+)
G180199 NA other upstream 860131 34557582 ~ 34560385 (+)
G180382 NA other downstream 67332 35969766 ~ 35973061 (+)
LOC120545305 NA other downstream 146172 36048606 ~ 36060523 (+)
G180410 hsdl2 other downstream 220646 36123080 ~ 36176371 (+)
G180414 NA other downstream 274529 36176963 ~ 36177922 (+)
LOC120545105 ptbp3,LOC106536240 other downstream 417901 36320335 ~ 36327396 (+)

Expression


Co-expression Network