RNA id: TU244283


Basic Information

Item Value
RNA id TU244283
length 418
lncRNA type read_through
GC content 0.49
exon number 4
gene id LOC120545328
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 35420516 ~ 35902434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACGTCTTCATGACTGCCAAGAGAAACGACTCAGAGTTGGTACTTAAAGctgagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagagaggacagacagagagaggacagacagagagaggaccgagagagacagacagagagaagacattttcagttcTGCTTCACCTTCATCTCTTCTCCAACAGAGAAACGACTCAGAGGCTGATCAGAACGACAGAGAGAGGACGTGAGGACAGGAGGACTCAGAGCTCAGAGGTGCTGGACCTGCATCAACTTACAggtcagaacacacacacacacacatacacacacacatacacacacacacacacacacacacacacatacagacacacacacacacacatacacacacacacacatacagacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244224 lncRNA upstream 519 35356398 ~ 35419997 (+) False LOC120545301
TU244218 lncRNA upstream 25732 35356398 ~ 35394784 (+) False LOC120545301
TU244200 lncRNA upstream 36132 35380182 ~ 35384384 (+) False G180259
TU244201 lncRNA upstream 36132 35380182 ~ 35384384 (+) True G180259
TU244215 lncRNA upstream 45086 35356398 ~ 35375430 (+) False LOC120545301
TU244406 lncRNA downstream 42602 35945036 ~ 35991027 (+) True G180379
TU244421 lncRNA downstream 68717 35971151 ~ 35971695 (+) False G180382
TU244389 lncRNA downstream 93539 35995973 ~ 36042427 (+) False G180366
TU244388 lncRNA downstream 99736 36002170 ~ 36023699 (+) True G180366
TU244432 lncRNA downstream 106927 36009361 ~ 36010237 (+) True G180387
XM_039779541.1 mRNA upstream 26389 35373617 ~ 35394127 (+) False LOC120545301
XM_039779555.1 mRNA upstream 88557 35280173 ~ 35331959 (+) False LOC120545309
XM_039779556.1 mRNA upstream 88557 35328060 ~ 35331959 (+) True LOC120545309
XM_039779469.1 mRNA upstream 188368 35205081 ~ 35232148 (+) True LOC120545272
XM_039779470.1 mRNA upstream 277031 35134471 ~ 35143485 (+) True LOC120545273
XM_039779546.1 mRNA downstream 146172 36048606 ~ 36060523 (+) True LOC120545305
XM_039779493.1 mRNA downstream 321360 36223794 ~ 36265675 (+) False LOC120545287
XM_039779577.1 mRNA downstream 325866 36228300 ~ 36236912 (+) True LOC120545323
XM_039779492.1 mRNA downstream 353516 36255950 ~ 36265675 (+) True LOC120545287
XM_039779494.1 mRNA downstream 354623 36257057 ~ 36265675 (+) False LOC120545287
TU244245 other upstream 464550 34953064 ~ 34955966 (+) True G180268
TU244144 other upstream 605606 34807258 ~ 34814910 (+) True G180216
TU244135 other upstream 616925 34716286 ~ 34803591 (+) False G180213
TU244088 other upstream 854564 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 860131 34557582 ~ 34560385 (+) True G180199
TU244424 other downstream 67332 35969766 ~ 35973061 (+) True G180382
TU244438 other downstream 155872 36058306 ~ 36058736 (+) False LOC120545305
TU244460 other downstream 220646 36123080 ~ 36125385 (+) False G180410
TU244462 other downstream 220646 36123080 ~ 36176371 (+) True G180410
TU244470 other downstream 274529 36176963 ~ 36177922 (+) True G180414

Expression Profile