RNA id: TU244200


Basic Information

Item Value
RNA id TU244200
length 1267
lncRNA type read_through
GC content 0.44
exon number 2
gene id G180259
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 35380182 ~ 35384384 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacaGGTTGTGTCGCAGTTAGTTTCCTTCGTCTGTTGCAGTATTCAGGGATAGAGAATGTGTCCTGTCATGATGGATATCTGCTTTGTTTTAGTTTCCTCTGTCTGGAGCTCCAGCTGAAGAACCTTTCTGATCACATCAGATCACAGTTTATGGAAGGAGATCTCAACACTTCTAGGAGGACCAAGAGTCCTGAAGATGGGGAATTCAGGGTCAACACCAAGACCAAGAAGAAGATGGAGCAGAGACAATCCTCCTGATCTCAGAGAGatgcagcagagagcagaagtcaGAAGAGCAGGATATGTTGCTGGAGGAGTAGGAGCAGCAGTAAGACTCCTGGTCCTTGCAGCTCCGTTCACTAGGGGGGCTAGTTTAGCAGCAGCAGGAGtgctagcagcagcaggaggagcacTAGCAGGAGCAGCTGCAGGAGGAAGATGAGCTGTGGttgtaaatgtaataataaaaacatgaaataggACAAAAGAGTAAAGAAAGTAGAAGAACTGGGGAGAAACTTAATGGAGATCATAAAACGGCTGAAGATTGACCTGGAAGAAATAAAGAGGACGTTTGAGAAGTTGGAGCAAAGATCAACTGAACTTCAGGCTGGAATCACTCTGATAGACATGGAGGACTTTCAGAGGAGTCTGAGACAAGTTTCTGAACTGGCAGAAAGGAGTGAAAAAGTTTTGTCTGCAGCTGAAATACTGATGGCAGATATTCATGGCCTGTTATTGTTCACTGTCAAAGTCTTCACAGTCACTGTGACCCTTGACGAGGATGAAGAGTAAGGAAACTCCATCGTCCAGTAAGCTGATCGCTGTCAAGAGGTCGTTGTCATGTTTGATCAGATGAAGGAAGAACTCAACAGGGGTGGATCTACAGGGAGGCAAGGGGTGGCAGCTGAccccccactgtagggccttgcccccCCCAGCTGTCCCCCTAACTTTGGTTATCAAAAACTGTGCTTATAAAAACAAACCATCACTATGTCCACAAtcttcttaaaacattgaaacaattaattcatattaattaataataaacaataattgTAGATCTTCTtccccctgcccctcaaatatTTAGCTACGTCAACAAACGTGCAGAGAATCCttgattcggtgcatccctgctgAAAGGTAAAGAGAGAAGCTGTAGGTTGAAGAAACTCAATCAGGATTCTGTCTGagggattttattttgaaacaggaagtgatgaGTTTGTACAGAAACTAAATCTGAAATAACAGGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244215 lncRNA upstream 4752 35356398 ~ 35375430 (+) False LOC120545301
TU244321 lncRNA upstream 18569 35361032 ~ 35361613 (+) True G180325
TU244308 lncRNA upstream 49739 35329757 ~ 35330443 (+) True G180315
TU244269 lncRNA upstream 314164 35039188 ~ 35066018 (+) True G180285
XR_005636662.1 lncRNA upstream 330051 35048840 ~ 35050131 (+) True LOC120545338
TU244283 lncRNA downstream 36132 35420516 ~ 35902434 (+) False LOC120545328
TU244289 lncRNA downstream 164393 35548777 ~ 35635192 (+) False G180297
TU244287 lncRNA downstream 172386 35556770 ~ 35897726 (+) True G180297
TU244288 lncRNA downstream 172386 35556770 ~ 36054110 (+) False G180297
TU244338 lncRNA downstream 174284 35558668 ~ 35559410 (+) True G180340
XM_039779555.1 mRNA upstream 48223 35280173 ~ 35331959 (+) False LOC120545309
XM_039779556.1 mRNA upstream 48223 35328060 ~ 35331959 (+) True LOC120545309
XM_039779469.1 mRNA upstream 148034 35205081 ~ 35232148 (+) True LOC120545272
XM_039779470.1 mRNA upstream 236697 35134471 ~ 35143485 (+) True LOC120545273
XM_039779455.1 mRNA upstream 356400 34986670 ~ 35023782 (+) True LOC120545265
XM_039779565.1 mRNA downstream 104433 35488817 ~ 35493227 (+) True LOC120545316
XM_039779483.1 mRNA downstream 185263 35569647 ~ 35578604 (+) True LOC120545281
XM_039779562.1 mRNA downstream 261170 35645554 ~ 35659827 (+) True LOC120545314
XM_039779546.1 mRNA downstream 664222 36048606 ~ 36060523 (+) True LOC120545305
XM_039779493.1 mRNA downstream 839410 36223794 ~ 36265675 (+) False LOC120545287
TU244245 other upstream 424216 34953064 ~ 34955966 (+) True G180268
TU244144 other upstream 565272 34807258 ~ 34814910 (+) True G180216
TU244135 other upstream 576591 34716286 ~ 34803591 (+) False G180213
TU244088 other upstream 814230 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 819797 34557582 ~ 34560385 (+) True G180199
TU244390 other downstream 466538 35850922 ~ 36018072 (+) False G180366
TU244424 other downstream 585382 35969766 ~ 35973061 (+) True G180382
TU244438 other downstream 673922 36058306 ~ 36058736 (+) False LOC120545305
TU244460 other downstream 738696 36123080 ~ 36125385 (+) False G180410
TU244462 other downstream 738696 36123080 ~ 36176371 (+) True G180410

Expression Profile