msgn1 (msgn1)


Basic Information

Item Value
gene id msgn1
gene name msgn1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21237154 ~ 21237826 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782627.1
TCATCCTCGCTGCGTGAACGTCTGGACGTCTCGGGATATTTCTAACATGGACCTGGAGGTTGTTACAGCTAAAATACTGTCTGAGTGGAAGAGCCATGAGAGTACGTTTGGAGAAGATCAGGACTCGCTCCTGTCTACGTCACCGGAGTCCTCGATTGACTCCATGTGCTCTTCCCCGGAGATGTGCTACTCCAGCGGGCATCAGGAGATGAAGGACTTCTCTTTCGCTTTCGCGGGACGCAGGGCGACTCCAGCAGCACAGAGGCTGAGCAAGCCCAAGATGTCTACCAGAAGACGCATGAAGGCCAGCGAGAGGGAGAAGATGCGGATGAGGAGTCTTGCAGAGGCTCTGCACCAGCTCCGCGACTACCTGCCGCCGGACTACAGCAAGAGAGGCCAGCCCCTGACCAAGATACAAACCCTCAAATACACAATTGAATACATCAACAAGCTTTCAGACACCCTGAGCCGCGCGTAACGGACGCAAATGTACTTTTTACGCATCAGGTTTACGCTCATCTGGACATTTAATGGAGTTAGTTTTATATATGGGATGCGTTATACAACATCTTTAAGATAACTTAATCATTcgatttcatttaatatttcttTTGTTTGCCCTTCTCCTGGTGTAAATATTTTTAGCGGGCACTTGGCAATTATTTTGTATATG

Function

symbol description
msgn1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within paraxial mesodermal cell differentiation; regulation of transcription by RNA polymerase II; and somatic muscle development. Predicted to be active in nucleus. Is expressed in fin; margin; mesoderm; myoblast; and tail bud. Orthologous to human MSGN1 (mesogenin 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007525 somatic muscle development biological_process
GO:0042789 mRNA transcription by RNA polymerase II biological_process
GO:0048342 paraxial mesodermal cell differentiation biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0000988 obsolete transcription factor activity, protein binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09077 MSGN1; mesogenin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782627.1 True 673 mRNA 0.48 1 21237154 21237826

Neighbor

gene id symbol gene type direction distance location
tulp4a tulp4,LOC102779174 coding downstream 13887 21186786 ~ 21223267 (-)
tmem181 tmem181,LOC102777939 coding downstream 51035 21178910 ~ 21186119 (-)
zbtb2b zbtb2,LOC104964770,LOC102290046 coding downstream 247792 20981795 ~ 20989362 (-)
LOC120546146 LOC103355020,LOC104928884,LOC104962358,LOC101075501 coding downstream 347418 20886589 ~ 20889736 (-)
LOC120547337 NA coding downstream 351650 20883137 ~ 20885504 (-)
LOC120546554 NA coding upstream 1360 21239186 ~ 21247602 (-)
cep57l1 cep57l1 coding upstream 30870 21268696 ~ 21273768 (-)
foxo3b LOC103370259 coding upstream 132681 21370507 ~ 21423550 (-)
afg1lb NA coding upstream 189573 21427399 ~ 21457242 (-)
nr2e1 nr2e1 coding upstream 237875 21475701 ~ 21483922 (-)
G186130 NA non-coding downstream 64530 21168509 ~ 21172624 (-)
LOC120546177 NA non-coding downstream 71165 21159371 ~ 21165989 (-)
G186148 myct1,LOC103355010 non-coding downstream 74260 21161237 ~ 21162894 (-)
LOC120546930 NA non-coding downstream 554122 20672237 ~ 20683032 (-)
G186018 NA non-coding downstream 608295 20628660 ~ 20628859 (-)
G186228 NA non-coding upstream 38093 21275919 ~ 21325593 (-)
G186271 NA non-coding upstream 199910 21437736 ~ 21469376 (-)
G186280 ostm1,LOC102784722 non-coding upstream 265715 21503541 ~ 21506804 (-)
G186321 NA non-coding upstream 465676 21703502 ~ 21703721 (-)
G186342 NA non-coding upstream 485797 21723623 ~ 21843619 (-)
si:ch211-51e12.7 NA other downstream 625 21226966 ~ 21236529 (-)
LOC120547366 NA other downstream 61626 21175338 ~ 21175528 (-)
LOC120547346 NA other downstream 64148 21172841 ~ 21173006 (-)
syne1a syne1,LOC102291171,LOC103355013,LOC102194633 other downstream 82342 21012392 ~ 21154812 (-)
G186006 NA other downstream 669675 20562437 ~ 20567479 (-)
armc2 armc2 other upstream 88430 21326256 ~ 21348649 (-)
prdm1c prdm1,LOC104943060 other upstream 996981 22234807 ~ 22244092 (-)
LOC120546367 LOC103362666,LOC100697912,LOC102794903,LOC104963850 other upstream 1277790 22515616 ~ 22524246 (-)
G186507 NA other upstream 1297828 22535654 ~ 22537723 (-)
G186527 LOC103362669 other upstream 1340779 22578605 ~ 22579683 (-)

Expression


Co-expression Network