cfd (LOC100692083,LOC102290312,LOC101478226,LOC102799388)


Basic Information

Item Value
gene id cfd
gene name LOC100692083,LOC102290312,LOC101478226,LOC102799388
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 7890590 ~ 7898328 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786938.1
ACATTTCCTGTCTTTCTAGTGGAAGCCTTTAAAAGCTCCCCAGTTGCTGGTTTTGGTTCAGTTAAACCGACATCATGGTGTCAAAGAAGGACTTTCTTGTGGCTGCTGCTGTTTTGGTTTTCGCCCTCATTTCACACAGCGAGGGTATACTTGGTGGCAGAGAGGCGGCGCCGCACTCTCGGCCCTACATGGCCTCCATCCAGGTGCCAGAAGGAGAGAATCTGAAACACGAGTGTGGAGGGTTTGTGATCGCAGATCAGTGGGTGATGACTGCAGTACACTGTCTGCCAACAGGGCCAAATGGAAGGAAAGTAGTGCTGGGTGTCCATTCTCTGAGTGAACCTGAAGAGACCAAGCAGACATTTGATATTTTGGAACTTCACAATCACCCAGGCTTCAGCGCGTCCAATTATGACAATGACATTGCTTTAATCAAGTTGGATCGTCCATTCAACATCTCTGAAGCTGTGAAAGCAGTGGAATTCCTGCGAGCGGGTGGCACAAACCCCGACACAGATGCAGTGGTGGAGACAGCCGGGTGGGGATCCCTGGATAACCTGGGGTCCAGACCAGACAAGCTCATGGAGGTGTTCATCGAGGTGGTCAACTCCAATCGGTGCAAACGCAGCGACTACTTTGGCAGAAAGTTCACCAATAACATGATATGTGCCCATAAATTATGCCCAGACCCCTGTGATCAACCATATAAGAAAGAAGACACTTGTGATGGTGACTCTGGAGGTCCTCTGCTCTACAACGGCATCGCAGTGGGCATCACTTCCAACGGAGGAAAGAAGTGTGGCCAAATTAAAAAGCCTGGAATTTACACCATCATCTCCCACTACACTGAGTGGATTGACAGCACCATGGCCCTGCAGCCCGCTGCAACTGCAGACCAGAGCAATtaaagagaatttttttttttctttccaccaCTTTTGCTTTCCACCACTGAGTCACTTATTATTGTACCTGCTATAAAGGGTTCCAATGCCCATTTGCAACTAATGCATGGCTCTAGAGCAGATGTGTCAAACtgaaggcccgcgggccaaatccggcccatTGCAAATTTAGATCCGGCCCACcaaaccaaaagacaggaaacTGTTTATCAAACTGCAATTATGCGACACTCggagcagaatttggcagatatgccgactttgagactcagaaattcccccagaagcagagagttttcatattcaggctatGAAAGTGGTTGCTgtgagtcagctgtgtggtagcctgcttttaaaaaaacgtaatcattgttttgcttgattggCTCAATTGTACGATGgctaaaaaaaactttagttGCTGCCTTTAattaggactttatgtcgaccaaactgtaactgaaaagactatatgagacatgcaataatacagtcaaaaatatttgacttttttgattaaatataagcatgaaaataaactgtacatgtctggcccttgatgtgattctcattttccagtgtgacccttggtgaagttgagtttgacagcGCTGCTGGAGAGATATACCTCCAGTATGGCAAATATACATCCACTTGTACTAACAGATTAGCCATCACTTTATAAAGGAatcaataaaatacagtttatcACGTTCA

Function

NR:

description
complement factor D-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01334 CFD; complement factor D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786938.1 True 1622 mRNA 0.45 5 7890590 7898328

Neighbor

gene id symbol gene type direction distance location
foxi2 foxi3,LOC104926792,LOC103363011,LOC101079731 coding upstream 69857 7815182 ~ 7820733 (+)
LOC120549761 NA coding upstream 99334 7782419 ~ 7791256 (+)
LOC120548893 NA coding upstream 118231 7764804 ~ 7772359 (+)
LOC120549656 NA coding upstream 135505 7750645 ~ 7755085 (+)
LOC120548892 NA coding upstream 145546 7743697 ~ 7745044 (+)
dnaaf9 LOC103358279 coding downstream 4936 7903264 ~ 7932852 (+)
slc4a11 slc4a11,LOC102775794 coding downstream 55956 7954284 ~ 8090378 (+)
rpia rpia,LOC102776079 coding downstream 195842 8094170 ~ 8108629 (+)
eif2ak3 eif2ak3 coding downstream 211577 8109905 ~ 8151043 (+)
atrn atrn,LOC102777237 coding downstream 257612 8155940 ~ 8334992 (+)
G200821 NA non-coding upstream 53636 7836647 ~ 7836954 (+)
LOC120548816 NA non-coding upstream 111081 7777935 ~ 7779509 (+)
LOC120549854 NA non-coding upstream 227030 7661263 ~ 7663560 (+)
LOC120549853 NA non-coding upstream 229345 7660032 ~ 7661245 (+)
LOC120549545 NA non-coding upstream 385528 7501963 ~ 7505062 (+)
G200831 NA non-coding downstream 220 7898548 ~ 7898779 (+)
LOC120549436 NA non-coding downstream 449752 8348080 ~ 8357752 (+)
G200871 NA non-coding downstream 687747 8586075 ~ 8586414 (+)
G200876 NA non-coding downstream 842687 8741015 ~ 8741239 (+)
G200972 NA non-coding downstream 998770 8897098 ~ 8898664 (+)
LOC120550068 NA other upstream 990246 6900139 ~ 6900344 (+)
LOC120549783 NA other upstream 1121928 6758637 ~ 6768662 (+)
vps29 eif5,vps29,LOC107595689 other upstream 1143188 6732248 ~ 6747402 (+)
G200492 NA other upstream 1207999 6677658 ~ 6682591 (+)
G200452 NA other upstream 1318833 6568276 ~ 6571757 (+)
G201057 dcaf10,LOC102795877 other downstream 1322313 9220641 ~ 9221302 (+)
psen1 psen1,LOC100697238 other downstream 1692842 9591170 ~ 9604625 (+)
G201287 NA other downstream 1810536 9708864 ~ 9817625 (+)
smoc1 smoc1 other downstream 2037408 9935736 ~ 10007687 (+)
LOC120549492 NA other downstream 2143697 10042025 ~ 10044094 (+)

Expression


Co-expression Network