LOC120549854


Basic Information

Item Value
gene id LOC120549854
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 7661263 ~ 7663560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637448.1
TACAACTGCGAGCACTTTGTCACAGACCTACGATACGGCATTCCAGAGTCTCGACAGGTTGCCACAGCAGCTACGATTGGAGCTGTAACTGTTGGGATTCTAATTCTGGGTGGTCTGCTGTTTACATACTGGCTCACATGTGACAAcaaggaggaaaggagagaaccAAGGAGAGAACGAAGGAGACATTACAATTGGCAGTAATGAGAAAGCAAGATGAAAGGAAAGATCCTGCTATTGTTTGAGTCAATTCACTTGGAAGTGATTATGATTTAAATGTTGTGATCTATTGTCTTTCTTGGTATAttgctatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactataacctTGGATAAGATTAGGCAACCTTTTGTGGAGAAAAATGAAGTTATAGGTAAATCCATGGCTGTTATGTTAGGTATTAGTGCTGTTGGGTAGGTTGACCCCatggttgtgtgtttaatgtctgAAATGTATAAAATGATTAATTTGGTGTATAAGACAATTTGTATGATTCTTTTAAGTCATGTGAAAAGTGAAGTTATCATATTTAGTACTAAAAATCTTGAACTTCCTTACTGTAGTTTGTTTGATCAATTATTATATTGCATTGATTTGTGTAACAAATAAACcgattttctttttaactttgGAGAACCTTTTATTTTACATGTCATGTTCTGTGTGTATTATGTACTTGCAGAAAAAGAcgaggggtctcatttataaaattgtgcgtaggatccttactaaaagtgtacaCACGCCCAAATGCCCAAAATGGCGTAcgccaaaaaaaagtcagatttataaaaccgtgtgtactgtacgcacacctgtaagcaatgttccctctGTCATGAATCCAGCATCCTGAGCCTGGTTTGCCtatgttttgtttctttgctcTAACCTGAAGTTTGTTTTTCTGAGTTTTCCTGAACACATCCCGGCtgatttgtaaattatagagcgtggtctagacctactctatctgtaaagtgtctcgagataacttatgttatgatttgatactataaataaaattgaattgaattgaattgattcaCCAACTGATTACACCTGCTGCTGTCTGCACACCTGGTCCTGATTACCATCCTCTGCACCATATAAGCTGTGGCCAGACAACCATTCCCTACTGGATCGTTGGGGTAAACATTCTTCACCTGGATTATCATTCACACCTGCCTGGCTGTCGACTAGTGGTGtgcagatcgaggcttcgtgaaacaatgaaacagttgaagcaaatgtgccatattgtgtcgaggcttcgaaacaatccgACACCCGTCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637448.1 True 1364 lncRNA 0.40 3 7661263 7663560

Neighbor

gene id symbol gene type direction distance location
LOC120549849 NA coding upstream 3021 7655115 ~ 7658242 (+)
LOC120548890 NA coding upstream 7911 7650942 ~ 7653352 (+)
letm1 letm1,LOC104955635 coding upstream 410129 7220316 ~ 7251134 (+)
jade1 NA coding upstream 472196 7173023 ~ 7189067 (+)
asmt2 asmt,LOC103354763,LOC100692897,LOC102199344,LOC102295279,LOC101473716 coding upstream 489407 7159488 ~ 7171856 (+)
LOC120549851 NA coding downstream 22885 7686445 ~ 7689502 (+)
LOC120549634 NA coding downstream 33374 7696934 ~ 7702694 (+)
LOC120549654 NA coding downstream 49490 7713050 ~ 7736949 (+)
LOC120548892 NA coding downstream 80137 7743697 ~ 7745044 (+)
LOC120549656 NA coding downstream 87085 7750645 ~ 7755085 (+)
LOC120549853 NA non-coding upstream 18 7660032 ~ 7661245 (+)
LOC120549545 NA non-coding upstream 156201 7501963 ~ 7505062 (+)
G200717 NA non-coding upstream 317261 7338346 ~ 7344002 (+)
G200704 NA non-coding upstream 399478 7261397 ~ 7261785 (+)
G200618 NA non-coding upstream 466629 7192571 ~ 7194634 (+)
LOC120548816 NA non-coding downstream 114375 7777935 ~ 7779509 (+)
G200821 NA non-coding downstream 173087 7836647 ~ 7836954 (+)
G200831 NA non-coding downstream 234988 7898548 ~ 7898779 (+)
LOC120549436 NA non-coding downstream 684520 8348080 ~ 8357752 (+)
G200871 NA non-coding downstream 922515 8586075 ~ 8586414 (+)
LOC120550068 NA other upstream 760919 6900139 ~ 6900344 (+)
LOC120549783 NA other upstream 892601 6758637 ~ 6768662 (+)
vps29 eif5,vps29,LOC107595689 other upstream 913861 6732248 ~ 6747402 (+)
G200492 NA other upstream 978672 6677658 ~ 6682591 (+)
G200452 NA other upstream 1089506 6568276 ~ 6571757 (+)
G201057 dcaf10,LOC102795877 other downstream 1557081 9220641 ~ 9221302 (+)
psen1 psen1,LOC100697238 other downstream 1927610 9591170 ~ 9604625 (+)
G201287 NA other downstream 2045304 9708864 ~ 9817625 (+)
smoc1 smoc1 other downstream 2272176 9935736 ~ 10007687 (+)
LOC120549492 NA other downstream 2378465 10042025 ~ 10044094 (+)

Expression


Co-expression Network