RNA id: XR_005637448.1


Basic Information

Item Value
RNA id XR_005637448.1
length 1364
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120549854
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 7661263 ~ 7663560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAACTGCGAGCACTTTGTCACAGACCTACGATACGGCATTCCAGAGTCTCGACAGGTTGCCACAGCAGCTACGATTGGAGCTGTAACTGTTGGGATTCTAATTCTGGGTGGTCTGCTGTTTACATACTGGCTCACATGTGACAAcaaggaggaaaggagagaaccAAGGAGAGAACGAAGGAGACATTACAATTGGCAGTAATGAGAAAGCAAGATGAAAGGAAAGATCCTGCTATTGTTTGAGTCAATTCACTTGGAAGTGATTATGATTTAAATGTTGTGATCTATTGTCTTTCTTGGTATAttgctatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactataacctTGGATAAGATTAGGCAACCTTTTGTGGAGAAAAATGAAGTTATAGGTAAATCCATGGCTGTTATGTTAGGTATTAGTGCTGTTGGGTAGGTTGACCCCatggttgtgtgtttaatgtctgAAATGTATAAAATGATTAATTTGGTGTATAAGACAATTTGTATGATTCTTTTAAGTCATGTGAAAAGTGAAGTTATCATATTTAGTACTAAAAATCTTGAACTTCCTTACTGTAGTTTGTTTGATCAATTATTATATTGCATTGATTTGTGTAACAAATAAACcgattttctttttaactttgGAGAACCTTTTATTTTACATGTCATGTTCTGTGTGTATTATGTACTTGCAGAAAAAGAcgaggggtctcatttataaaattgtgcgtaggatccttactaaaagtgtacaCACGCCCAAATGCCCAAAATGGCGTAcgccaaaaaaaagtcagatttataaaaccgtgtgtactgtacgcacacctgtaagcaatgttccctctGTCATGAATCCAGCATCCTGAGCCTGGTTTGCCtatgttttgtttctttgctcTAACCTGAAGTTTGTTTTTCTGAGTTTTCCTGAACACATCCCGGCtgatttgtaaattatagagcgtggtctagacctactctatctgtaaagtgtctcgagataacttatgttatgatttgatactataaataaaattgaattgaattgaattgattcaCCAACTGATTACACCTGCTGCTGTCTGCACACCTGGTCCTGATTACCATCCTCTGCACCATATAAGCTGTGGCCAGACAACCATTCCCTACTGGATCGTTGGGGTAAACATTCTTCACCTGGATTATCATTCACACCTGCCTGGCTGTCGACTAGTGGTGtgcagatcgaggcttcgtgaaacaatgaaacagttgaagcaaatgtgccatattgtgtcgaggcttcgaaacaatccgACACCCGTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637447.1 lncRNA upstream 18 7660032 ~ 7661245 (+) True LOC120549853
XR_005637402.1 lncRNA upstream 156201 7501963 ~ 7505062 (+) True LOC120549545
TU271989 lncRNA upstream 317261 7338346 ~ 7344002 (+) True G200717
TU271990 lncRNA upstream 317261 7338346 ~ 7344002 (+) False G200717
TU271975 lncRNA upstream 399478 7261397 ~ 7261785 (+) True G200704
XR_005637283.1 lncRNA downstream 114375 7777935 ~ 7779509 (+) True LOC120548816
TU272117 lncRNA downstream 173087 7836647 ~ 7836954 (+) True G200821
TU272129 lncRNA downstream 234988 7898548 ~ 7898779 (+) True G200831
XR_005637385.1 lncRNA downstream 684520 8348080 ~ 8357752 (+) True LOC120549436
TU272181 lncRNA downstream 922515 8586075 ~ 8586414 (+) True G200871
XM_039787023.1 mRNA upstream 3021 7655115 ~ 7658242 (+) True LOC120549849
XM_039785402.1 mRNA upstream 7911 7650942 ~ 7653352 (+) True LOC120548890
XM_039785595.1 mRNA upstream 410129 7220317 ~ 7251134 (+) False letm1
XM_039787024.1 mRNA downstream 22885 7686445 ~ 7689502 (+) True LOC120549851
XM_039786673.1 mRNA downstream 33374 7696934 ~ 7702694 (+) True LOC120549634
XM_039786706.1 mRNA downstream 49490 7713050 ~ 7736949 (+) False LOC120549654
XM_039786708.1 mRNA downstream 49534 7713094 ~ 7736949 (+) False LOC120549654
XM_039786707.1 mRNA downstream 49539 7713099 ~ 7736949 (+) True LOC120549654
XR_005637554.1 other upstream 760919 6900139 ~ 6900344 (+) True LOC120550068
XR_005637532.1 other upstream 766841 6894216 ~ 6894422 (+) True LOC120550044
XR_005637539.1 other upstream 772346 6888711 ~ 6888917 (+) True LOC120550052
XR_005637535.1 other upstream 773707 6887350 ~ 6887556 (+) True LOC120550047
XR_005637540.1 other upstream 776502 6884554 ~ 6884761 (+) True LOC120550053
TU272417 other downstream 1557081 9220641 ~ 9221302 (+) True G201057
TU272715 other downstream 2045304 9708864 ~ 9817625 (+) True G201287
TU272771 other downstream 2327012 9990572 ~ 10007687 (+) True smoc1
unassigned_transcript_1139 other downstream 2366436 10029996 ~ 10034827 (+) True LOC120549541
unassigned_transcript_1140 other downstream 2367000 10030560 ~ 10031384 (+) True LOC120549542

Expression Profile