LOC120549849


Basic Information

Item Value
gene id LOC120549849
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 7655115 ~ 7658242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787023.1
CGTAAGCGCACTTAGATATCAGTCTCCGGCAGCATAAATAGGCTGCAGGTCACTGCTACTCTTACTGATAGACGAAGAACTGAAGAGATGGATCCTAAAAGGaTTGAGGCAGAGCCCGGAGACCTGATAGAGATCTTCCGTGGGATGTATCAGCACTGGGCCCTCTACATCGGTGGAGAGGAAGTTGTTCATTTCACTCCTCCAAATGGTGATATTGCCCTGGAGACCATAGGAAAGGTGAAGCGTGAGAAGATCTGGAAAGTGGTCGGCAATGATAGATTCAAGATCAACAACCTCCTAGATAACAAGTACCAGCCGCGTGAGTGTTACATCATCTTGAAGGAGGCCTGTAGCATGGTGGGTCTGAAGATGCCGTACTCTATCGTGAATAGCAACTGCGAGCACTTTGTCACAGACCAACGATACGGCATTCCAGAGTCTCGACAGGTTACCACAGCAGCTACGATTGGAGGGGCAGTTGTAGTAGGTGTAGGGATTGTAGCTATGGGAGCTCTGGTCGCATCCTGGCTCAAACATTACAAcaaagaaggaaggagagaagaaagaagagaaccAAGGAGAGAACGAAGGAGACATTACAATTGGCAGCAATGAGACAGCAAGATGAAAGGAAAGATCCTGCCATTGTTTGAGTCAATTCACCTGGAAGTGATTATGATCTAAACATTGTGAATAAACTATTGTCTTTGTTGGTGTATTGCTATCAACATACACacgtacaaacacacacgcggacacacacacacacacaatacaacttTGGAAAAGATTAGCCAAGCTTTTgtggagaaaaataaagttataggTAAATCCATGGCTGTTATGTTTGATATTAGTGCTGTTGGGTAGGTTGACCCCATGGTTGTCTGAGACTATGTCCTCTGCCATTCCCCAATTGGATGTTGTGAGCTCTAGATCACGGTCGGACCGTTTGCTGACACTTGAATCCGTCAGCACAGCTGAAACTGCACCTCTTTGTTCTAACAGGCGATCGAGCATAAGATAGACAGAATTCCATTGAGTGGCAACATCTTGCACAAGTTTATGCTCTGCAACATTCAGTTCTCTTTGTTTTACTGCAAGTGCTGTGGTGGCCTTTGTGCTTTTTTTGAAGTGTGAAACAAGGCGCCTTGCAGCAGCGACAGTGCGACACACAGGATCTTTCTTTAATGTGCTGTTAATGCAGAATTGCAGTGTATGCCCCGCACAACGGACTCCCTGTACAGTTCCCCACGATGGGTCTTGGGCCAGTTGATTGGTGCATGCAACCATATTCATTGCATTGTCATGGACAACAGAAACCATCTTAATATCTGGAATGTCCCAATCAGAAATGACTTATTTCAGTGTTTGTGAAATATGTTCTGCTGTATGACtttcctccatttttttttgttgctaacACAAAATTTTCCAGTCGCCAGGCGTCAGTAATAAGATATGCCTCCATTTGCAGCAAGGTCCAAATATCTGTGGTGAGGCTGACTGCTTTGCAATTGTTAACATGTAAACCTCCGCGCAATAAACTCTGCAATTTTGTC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787023.1 True 1562 mRNA 0.45 4 7655115 7658242

Neighbor

gene id symbol gene type direction distance location
LOC120548890 NA coding upstream 1763 7650942 ~ 7653352 (+)
letm1 letm1,LOC104955635 coding upstream 403981 7220316 ~ 7251134 (+)
jade1 NA coding upstream 466048 7173023 ~ 7189067 (+)
asmt2 asmt,LOC103354763,LOC100692897,LOC102199344,LOC102295279,LOC101473716 coding upstream 483259 7159488 ~ 7171856 (+)
pgrmc2 pgrmc2 coding upstream 501289 7141282 ~ 7153826 (+)
LOC120549851 NA coding downstream 28203 7686445 ~ 7689502 (+)
LOC120549634 NA coding downstream 38692 7696934 ~ 7702694 (+)
LOC120549654 NA coding downstream 54808 7713050 ~ 7736949 (+)
LOC120548892 NA coding downstream 85455 7743697 ~ 7745044 (+)
LOC120549656 NA coding downstream 92403 7750645 ~ 7755085 (+)
LOC120549545 NA non-coding upstream 150053 7501963 ~ 7505062 (+)
G200717 NA non-coding upstream 311113 7338346 ~ 7344002 (+)
G200704 NA non-coding upstream 393330 7261397 ~ 7261785 (+)
G200618 NA non-coding upstream 460481 7192571 ~ 7194634 (+)
G200626 NA non-coding upstream 525993 7128175 ~ 7129122 (+)
LOC120549853 NA non-coding downstream 1790 7660032 ~ 7661245 (+)
LOC120549854 NA non-coding downstream 3021 7661263 ~ 7663560 (+)
LOC120548816 NA non-coding downstream 119693 7777935 ~ 7779509 (+)
G200821 NA non-coding downstream 178405 7836647 ~ 7836954 (+)
G200831 NA non-coding downstream 240306 7898548 ~ 7898779 (+)
LOC120550068 NA other upstream 754771 6900139 ~ 6900344 (+)
LOC120549783 NA other upstream 886453 6758637 ~ 6768662 (+)
vps29 eif5,vps29,LOC107595689 other upstream 907713 6732248 ~ 6747402 (+)
G200492 NA other upstream 972524 6677658 ~ 6682591 (+)
G200452 NA other upstream 1083358 6568276 ~ 6571757 (+)
G201057 dcaf10,LOC102795877 other downstream 1562399 9220641 ~ 9221302 (+)
psen1 psen1,LOC100697238 other downstream 1932928 9591170 ~ 9604625 (+)
G201287 NA other downstream 2050622 9708864 ~ 9817625 (+)
smoc1 smoc1 other downstream 2277494 9935736 ~ 10007687 (+)
LOC120549492 NA other downstream 2383783 10042025 ~ 10044094 (+)

Expression


Co-expression Network