pcsk1 (pcsk1)


Basic Information

Item Value
gene id pcsk1
gene name pcsk1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10340680 ~ 10355619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797263.1
cacacacacacacacacacacaacgcacaaaCCAGCCCTTCCCATCAGCAGTATTTCCTCTCCTTGGCAGACGAATAACGCACAGTTTCTCGCTCCCTCCATCTCAGCCAGCTGTTTCTTAAGGAATAAGCTAACCAGAAAACAAGGGAATTTCTTTCTTATCACGACAAAACATTTCGGAGTTTTATCTGTTTTCTTCGGAGCATCTAAGCTGTTTGTAGTCttcatagatttttttttttttctcatctggTTGAATTTCCTTTGAGATGGAAGTGAGATGTCGTCCAGCGgtgatgtgttgtgttttcGCCATCCTCTTCTCCGTGGTTCCCCGGTCGCTGGAGTCCTCTTACAGGGACAGACAGTACCTGAACGAGTGGGCAGTGGAGATCCCAGGCGGACTGGCCGCTGCAGAGGGGATCGCCAGAGAGCTGGACTACAAACTGGTCCGACAGATCGGGGCCCTGGAAGACCATTTCTTGTTCAAACACCGCAATCATCCTAGCAGAATGAAACGAAGCGCCAGCCATATCACCAGGCGGCTGTCGGAGGATGATCGGGTGCTGTGGGCAGAGCAGCAGTACGAGAAACGTCGCAGCAAGCGAGGCGCCCTCGGGGAGTGCAGGGACTGCCCAGTGGATAAGCTGTTTGATGATCCCATGTGGAACCAGCAGTGGTACCTGCAAGACACACGGACTTCTTCTTCGCTGCCGAAGCTGGACCTGCACGTGATCCCTGTGTGGCAGAAAGGCATCACAGGAAAAGGAGTGGTCATCACCGTTCTGGATGACGGGCTGGAGTGGAACCACACAGACATCTACTCCAACTACGATGCAGCAGCCAGCTACGATTTCAACGACAACGACCCGGACCCTTTCCCCAGATACGACTCCACTAATGAAAACAAACATGGGACCAGGTGTGCTGGGGAGATCGCTATGCAGGCAGACAACAATAAATGTGGTGTTGGGGTGGCATACAACTCCAAGGTTGGAGGGATTCGTATGCTGGATGGGATTGTGACTGATGCCATCGAGGCCAGCTCTATTGGGTTCAATCCAAACCATGTGGACATCTACAGTGCCAGCTGGGGACCCAACGATGATGGCAAGACAGTGGAGGGCCCTGGCCGCCTGGCCCAGAAGGCATTCGAATACGGTATCCAGAAGGGCCGTGGTGGAAAAGGCTCTATCTTTGTTTGGGCATCAGGTAATGGTGGGCGCCAGGGCGATAACTGTGACTGTGACGGTTACACAGACAGCATCTACACCATCTCAATCAGCAGTGCCTCCCAGCAGGGCCTGTCCCCGTGGTACGCTGAGAAGTGCTCCTCCACTCTGGCTACAGCATACAGCAGTGGAGACTACACCGACCAGAGGATTACGAGTGCTGATCTGCACAATGAGTGCACTCAGACTCACACTGGAACATCGGCCTCTGCCCCCCTGGCTGCTGGTATATTTGCCCTGGCACTGGAACAAAACCCAGATCTTACCTGGAGAGACCTGCAGCACATTGTGGTCTGGACCTCAGAGTTCGATCCTTTGGCCAATAACCCAGGGTGGAAGAGGAACGGAGCGGGGCTGATGGTCAACAGCCGCTTCGGCTTCGGCCTTCTCAACGCTAAAGCCCTGGTGGACCTCGCCGACCCGGCCTCTTGGAAGCATGTGCCTGAAAAGAAGCAATGCATCGTCAGGGATGATTCTTTCCAGCCCAGGGAGCTGAAAGCAGCAGGGGAGATCACTATAGAGATTCCAACCAAAGCCTGCGCAGGGCAGGAGAACGCAGTCAGCTCATTGGAGCATGTGCAGGTGGAGGCCAGCATTGAATACACCAGGAGAGGGGACCTGCACATAACACTCACCTCCCCAGCCGGCACAAGCACAGTGCTGCTGGCTGAGCGGGAGAGGGACACATCCTCTAATGGCTTCAGGAACTGGGACTTCATGTCTGTTCATACATGGGGAGAAGATCCTGCTGGTACATGGACCCTAAAGATCACAGATACTTCGGGCCGTATGCAGAACGAAGGTCAGATTTTGGACTGGAAGCTGATTCTTCATGGGACGTCAGAGAAGCCAGAGCACATGAAGAAACCTAGAGTGTACATTCCCTACAATGCTGTGCAGAATGACCGCCGTGGTGTGGAACATATGGATGACATGATGGAGGAGCCCACACAGGCCTATCCACCTCCAAAGACTGAGACTGCACAAGATTCCCTCCCTTCCAACCCAGAGAAGGACCCCAGAAAGCCCTCTAATCCACCCTACTCCCCTTCCATGGCCCTGCTGCGTCTTCTTCAGACGGCCTTCAACAGGCAGACCCCTGCCCTGCAGCAGCCCCAGTCCGTAGCCAAGACCTCCTCTACCTGGAGGAAGCAGCAGCCGGGCCAGAGCCTCTCTCCTCCTGCAACAAGACTCCCCTCTCAATCATTGTACCAGGCTCTGGACATGATCAACAAGTACCGGGGCCGGGCCCCTGAGGACAGTGTCTACAGTGATTACACGGATGGCTTCTACAGCACCAAGCCGTACAGGCACAGAGATGACCGACTGCTGCAGGCCCTGTTTGAGATGATAGATGATGACCGCAATTGAAGGCCCTGAGGAAAGGGGAGGAGGcaagggaagaggagaggagaagaaagatATAAGATTAGGGGGATGCATGGTTACGTGTTGGTTGGGGAGCAGAGGAACGAGgcgaagagaagagaggaagcagAGGGATGGGATCGGGTATTGGAAGagtggaggagaagagaagaaataCAGGAAAGAGAACTCTTCCACTTAGTTCTGCAAAATGCTGCATACCTCACCTCTTTATCTTGATTTGCCAATCACCATTAATCTATTAATTCTGTCATTCAGTCATGCAAAATTTCCAGTCCACACGTGATTCAAAACTTGTTTAGGGCCTCTCTGCTACAAAATGTATCTCCATGTAGTGCAAGTGAAAGCATTTAAATCATAAGAAAAGAGGGGTAGGCcttgtctctcttctcttcacTGCCTGCTTAAGCATGCCACCTTTAGAATATAAGTTTTGTATAAGTATCTCTATATAATCTATATATTATACAAAGACTATGATTGTAATATGGTTTTGAAAACACATCTAAAATCTTCACTTTCCAAAAAATCTTTTCCATTTCTATTCATATTgcatatgttttattttcaatatgTTTCACACTATTATGGGACACCTACTCACTTtggagggaaaaaaatcatCCTTAAAAAACTGACATAAAGTCATGAAATTAAAGTCAGCATACATTCAAAATGAAGCAAAATCCAAAGTCAATCCGCAATTAGATATGTTTGACCTGTGTTGACAAAAGATTTATTCTCAGGGTGTCAACAGAGCTCAAGAAAGTAACAAAATCATATTCTGGCCTCTTCTAAGTATTAAGAGAAATATATTGTGTAaaatattatatactataaaaGTATGCAGATGAGACTATACAGTTGTACCAATACACTATTATAAAAGATAAAACATTAGCAACCTCTACTCTGGTAATAGTAACAAACAGATAGGATTTCTTTCAGTTGGAGAGTAGCGATACATTCAAAGTGGAGGAAAATTACAGATTAATCTTCTTTGTGctatttgtttaattttgtaTAAGTACAATGCTGCATTAAATGAAATATTTTTCTAAGGATCCTCATAGTTTATGgaaataatatatacagtatcgaACCCTTGAACAGTTTATTTTCTTGTGACATAGTTCACTTAATATCTGAAAAATCAAAAATGAGCACTGCCAAAATATTTGCTGTCAAAAAGCTTCCGTGTATTTCAGTGAAGGTGCGAGTGGCTAACATGTTGTTTGTTTATCATCTGCAATATGCCAACAACAAACAGTTCCTTGAATCCTCGACAGAGTATTGCATTACATTTACTTCTCTGgcattatttatttgatattaATGGACCTATTACACTTCAGAAAAGGACCAGAAACTGCAGAATAGGGGGCTCTGCACCACAACCTTCAAGCACATTCATCTTAAACGCCTTaatatatgctgtaatacaTGTGCATACTCATCACCACATGGTGTAGATCAATTTACAGATGCTGGTTTAAGTGTTTATGACATGAATAGCTATGAATCCTCTATGCAGAGTCTCCAACCTCCAGCCTGGAACTGCCTGCCCCGCTTCTCTGCCAACAAGGTGTCAGGAAAAAGACGATGTTTGGGGCAATGCTTCACATGCACCCTGTAATTTATCCATTCTTTAGTCTAGCCCGTGCTGTTtactttatgttttgttttttttcagtccaAAGTTGTTTACACAAACCAATATTATGTTGCAATTTCTGTATcgatgtaaaaaaataatgacatttatCTTAATAAACTGCAAAGTGAC

Function

symbol description
pcsk1 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in peptide hormone processing. Predicted to act upstream of or within proteolysis. Predicted to be located in transport vesicle. Predicted to be active in extracellular space; membrane; and neuron projection. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in obesity and proprotein convertase 1/3 deficiency. Orthologous to human PCSK1 (proprotein convertase subtilisin/kexin type 1).

NR:

description
neuroendocrine convertase 1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01359 PCSK1; proprotein convertase subtilisin/kexin type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797263.1 True 4407 mRNA 0.47 14 10340680 10355619

Neighbor

gene id symbol gene type direction distance location
cd8a NA coding upstream 47632 10290070 ~ 10293048 (+)
cd8b NA coding upstream 58160 10278453 ~ 10282520 (+)
zmat1 NA coding upstream 65721 10266815 ~ 10274959 (+)
gnrh2 NA coding upstream 74205 10264428 ~ 10266475 (+)
ptpra ptpra coding upstream 83586 10232892 ~ 10257094 (+)
LOC120557177 LOC104957060 coding downstream 1113 10356732 ~ 10359945 (+)
ell2 ell2 coding downstream 9230 10364849 ~ 10384715 (+)
nudt2 nudt2 coding downstream 69807 10425426 ~ 10427654 (+)
ubap1 ubap1 coding downstream 87664 10443283 ~ 10450893 (+)
dcaf12 dcaf12,LOC102784774 coding downstream 98314 10453933 ~ 10468155 (+)
G37198 NA non-coding upstream 29517 10310067 ~ 10311163 (+)
G37186 NA non-coding upstream 80351 10257250 ~ 10260329 (+)
G37177 NA non-coding upstream 133923 10204789 ~ 10206757 (+)
G37163 NA non-coding upstream 288343 10052128 ~ 10052337 (+)
G37104 NA non-coding upstream 333824 9928035 ~ 10006856 (+)
G37215 ube2r2 non-coding downstream 46639 10402258 ~ 10434702 (+)
G37238 NA non-coding downstream 97866 10453485 ~ 10453731 (+)
G37337 NA non-coding downstream 171080 10526699 ~ 10526936 (+)
G37342 NA non-coding downstream 198413 10554032 ~ 10559006 (+)
G37363 NA non-coding downstream 305247 10660866 ~ 10661324 (+)
G37197 NA other upstream 30684 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 484024 9760233 ~ 9856656 (+)
G36744 NA other upstream 2111960 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 3034337 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 3068312 7209996 ~ 7272368 (+)
glrx glrx other downstream 32289 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 641611 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 996459 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 1029565 11385184 ~ 11394398 (+)
G37597 NA other downstream 1424559 11780178 ~ 11805394 (+)

Expression


Co-expression Network