LOC120557177 (LOC104957060)


Basic Information

Item Value
gene id LOC120557177
gene name LOC104957060
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10356732 ~ 10359945 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797264.1
aagaTATGTGAAGAAAGGGGAGtggaaaatattgcaaaaacaaggacaagaaagagaaagaaggagcaAAGTAAGAAAATAATCACTGGCGGAAAACAGCACATTTCCACGAAGAGACAGtttgagcagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagaagcagaatTTGTTTTGGCAAAAATAGTGGCCTCAGGCAAAGGTTTGTGTGTTTATCCACCAGCAGGTCACAATATGGCGCTATTCCCATTCTTCAAGAAGCCCGCAGGACCAGTCAGAGTGACCAGAATACAACTGGTTCTGCACTGTTTTCTCCTGTCTCTTATCATATACTTCCTCCATGGACGTAAAGCCGCTGGCAGTGTGGAGTCATCTCATCCTATCTTTCATTCCTTGGGAATGGACAGGGGAAGAGTAACGACAGACATGGCGGTCATCAAGGCAACGGCACCAAAAACTCCTCTGGAGACCCCATGGGGTGCTCCTTTAGTGTGGGGTGACACCCGTAAATCAATTTGGCGCAGGGCTAAATTTGCAAATCAGGGAACCCATACAGGTCTGCTGGCCGTCGTGCTGGGAACTTATGCCCAGTTTGTTCGACGTTTCCTCTCATCAGCTGAAACCCACTTTCTCCCTGGTCAGATGGTCACCTACTACATTCTCACGGACAATCCCCGCTCTCTGGATCCTCCCATCGAGTTGGGGCCAAAACGACAGCTGAAGGTGTTTCCTGTTGCAGAGCTGCCTGGTTGGGATAGATTGGCCCGTCGCCGGATGGCCCTGCTTGCTGATGCTATCAGGAACCCAATCGGCAGCGAGGTTGAATACATCTTCTGTGCTGACATCGATCAGGAGTTTGTGGCCCCTGTGGGAGAGGAAATCCTAGGAGACCTGGTGGCCACATTGCACCCAGAGCTCTATGGGATGCCACGAAATGCTTTTCCTTACGAAGTCGAAGAGGTCTCATCAGCTTGCGTGGAGGAGGATGAAGGGGACTACTACTACACCTCTGAGTTGTATGGGGGGTTGGTTTCTGAGATGTACAAACTGGCTCGAGCCTGTTCTTTGCTCATTTTgcaggaccaggctaatggggTAATGGCCAGGGGCCTCGAGGAGAGCTACCTGAACCGCTACTTGATCGACCACAGGCCAACCTGTGTGCTGTCCCCAGAGTACAGCTGGTGGGACTCGGCCCTGGCTCCTGATGTGCTTGTACAGAGGCTTGTCTCTTTGGGAAGGAACCAGAAAAGAGAATCAATGTAAAATGAGGGACAGAAGGGTTCTGCTGGCTGAACGCTGTAAAGTATGGATGCagatctcattcccacatgaaGAACTACTGTTTTTAGTTGTAAATTTCCTTTTGGAGAAGTTCTCCGCTCAAATTTTAGCAAACAGTGTTTTGAAAGGACAGGAGATAAAGGGAAAAGATGAAGAGAAAGCACACATTCCAATCGTCTTCATTCAATTCAtaatttccatttcattttctgTTCTATTTGCCAATAAATGTAGCCTGCGATCACACCGAAGCAAACTGCCCAATCTGCTCTCAATTAAAGACCCATTTGTGTGAACAGGATCTCTGCATGCTATCTCCTCCACAgcagacaaaaaataaattgaccTGTCTCTTTAAACAAAGCACTGCGCTCTCCATTAATGTCAGCCTCGGAGATACTGCTCTAGTGGCTTTGTGGTCAGCAGCGATAAGAGTCAACAGTGTAAGAGCACACTTTCCCTGCAGTGGCCAATCATTAAGTGGAGGAGCTGCTGTTTTAAGTTCTTTAAATACCAGGTGGGGGGAAAATGGATACAACGAGATGCTGTTTCTCCAGGTTGCACGTGTATAGAAACTTCCGCAAAAGCTAAAATAGTTTTAAAATGGGTGAAACTGGTTCAGGttcattacatttaaaaactattattttcccCATTATCTGTTGGAGTAAAAGGTAAACTCAAA

Function

NR:

description
PREDICTED: globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797264.1 True 1996 mRNA 0.47 3 10356732 10359945

Neighbor

gene id symbol gene type direction distance location
pcsk1 pcsk1 coding upstream 1113 10340680 ~ 10355619 (+)
cd8a NA coding upstream 63684 10290070 ~ 10293048 (+)
cd8b NA coding upstream 74212 10278453 ~ 10282520 (+)
zmat1 NA coding upstream 81773 10266815 ~ 10274959 (+)
gnrh2 NA coding upstream 90257 10264428 ~ 10266475 (+)
ell2 ell2 coding downstream 4904 10364849 ~ 10384715 (+)
nudt2 nudt2 coding downstream 65481 10425426 ~ 10427654 (+)
ubap1 ubap1 coding downstream 83338 10443283 ~ 10450893 (+)
dcaf12 dcaf12,LOC102784774 coding downstream 93988 10453933 ~ 10468155 (+)
ubap2a ubap2,LOC102784312 coding downstream 109440 10469385 ~ 10490050 (+)
G37198 NA non-coding upstream 45569 10310067 ~ 10311163 (+)
G37186 NA non-coding upstream 96403 10257250 ~ 10260329 (+)
G37177 NA non-coding upstream 149975 10204789 ~ 10206757 (+)
G37163 NA non-coding upstream 304395 10052128 ~ 10052337 (+)
G37112 NA non-coding upstream 394155 9957835 ~ 9962577 (+)
G37215 ube2r2 non-coding downstream 42313 10402258 ~ 10434702 (+)
G37238 NA non-coding downstream 93540 10453485 ~ 10453731 (+)
G37337 NA non-coding downstream 166754 10526699 ~ 10526936 (+)
G37342 NA non-coding downstream 194087 10554032 ~ 10559006 (+)
G37363 NA non-coding downstream 300921 10660866 ~ 10661324 (+)
G37197 NA other upstream 46736 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 500076 9760233 ~ 9856656 (+)
G36744 NA other upstream 2128012 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 3050389 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 3084364 7209996 ~ 7272368 (+)
glrx glrx other downstream 27963 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 637285 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 992133 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 1025239 11385184 ~ 11394398 (+)
G37597 NA other downstream 1420233 11780178 ~ 11805394 (+)

Expression


Co-expression Network