dcaf12 (dcaf12,LOC102784774)


Basic Information

Item Value
gene id dcaf12
gene name dcaf12,LOC102784774
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10453933 ~ 10468155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798044.1
GTGTGCGGCTGCGCGCTGCTCAATGCTTTCGCCGTTGCTGACGCGAGTGGTCAGGAAAACGGAGTGTGTGTAGCTACTCTCTGGCAGCTAGCTAGTTAACGAAGGCCAGAGTGTAGTATTAGTTGGGAGCGTAGGGGACGAGGTAATGATAGTGAGTCAGCGGCAATAACCAGCTTGTTACCAACCTCTCCCGTATGTGATCGCCCTTGCTCGTCGTCGGACGCTGCCAGCGAGGGCCAAGGAACAAAATAGCATATCGCCATTATATGATCCAGTGTCCAGCGTCACTTTTACCCTCCATGTGGGTGAGGGAACTGTGTGTATCAGATTATGGCGAGAAAAACAGTTAGCAGGAAAAGGAAGGCAGGAGAGCCCAAAGACCAACAACAGCTGGGCTGGTGTCAAGCGCCACACAAGCGGAGCCGTGTTTCTTGTTCATCACGTCACGCCCAGCAGTGGTGGTGCAGTCGGCGCTCGGTGGTATGTGCTCTCCGGGGGCGGGAGTTCAGACCTCAACAGCAGCATGAGTTGCGGCTCCAGCGGAGCCTTCAGGGTTTTGCGGCTGGCAGGCTCCCCGGCATCCTCAAGGAGAGGGAGTTCTCCCTGGGGCGACTCAACAAGGTGTTTGCTTCACAGTGGCTCAACCACAGGCAGGTGGTATGCGGGACCAAGTGCAACACGCTTTTTGTAGCTGATGTCCTGACGGGGCAGATAACGCGCATTCCCATGCTGAAGGACAGGGAGTGTCATGGTGGAGGCTCTGGGGTTGCGGGTGCAGTGGTGGCGGGGCGGCATTACCACCCCATAGCAGGCTCTCGTGCCCGGCTGGACCAGCAGGGTTGTGGGATCCACGCTATTGAACTCAACCCCTCCAGAACACTGCTAGCCACCGGAGGAGACAACCCCAACAGCCTGGCCATCTACCAGCTGCCCACACTGGACCCTGTTTGTGTGGGAGATGAAGGTCACAATGATTGGATCTTCTCCATAGCATGGATCAGTGACAATATGGCGGTTTCTGGGTCCAGAGATGGCTCCATGGGCCTGTGGGAGGTGACCGAGGACGTAATGAGCCAGGCTGAACGCAGTCAGAATGAGGAGGCAGTACCTTCATACGCCCACATCTCCCACCGTGCCCTCAAGGACATCCCAAAGGAGTACACCAACCCATACAACTGTAAAGTCCGTGCACTGGCCTTCAACAACAATCATAAAGAGCTGGGTGCTGTCTCTTTGGATGGCTATTTCCACCTTTGGAAAGCTGAGCACAACTTGTGCAAGATACTCTCCACCAAGCTGCCTCACTGCAAAGAGAATGTGTGTTTGGCATATGGACAGGACTGGTCCGTGTACGCGGTGGGTTCTCAGGCCCATGTTTCCTTTCTGGATCCACGGCAGCCTACACACAGCATCAAGTCTGTCAATTCCAGAGAGAGGGGAAGCGggatcCGTTCAGTGAGTTTCTACGAGCACATTGTTACAGTGGGCACCGGCCAAGGTTCCCTTCTCTTCTACGACATCCGGGCCCAGAGATTCTTGGAGAACCCTTTGAATCCAGCCGGAGGGTACCGAAAGTGCCCAGGAGATGGCATACTCAAACTCTCTACAGGGAAAGGCTGGCTGAATCACGATGAGACGTGGAGAAGTTACTTCTCAGACATTCATTCCTTCCCCAACGCGGTGTACACCCACTGCTACGACGACTCTGGCACCAAGCTGTTTGTAGCGGGTGGACCACTCTGTTCTGGCCTGCACGGCAACTACGCAGGACTGTGGAGCTAGCCTCTTcgtcttctccctccctctatcaCTACATCCTCGTCCAGATTTATTCCTAACCAGTCCCTCCATCCCTCTTCTTCTACAAGTCACTCTGTTTTGCTCACACATGGACTCAGGAGCATGATTTTGCCCCCCCACAGTATCACAGCTTTGAATATTGTGTAGGTTTGTGTCCACTTTTACACTATACCTTTCTCCTCCAATTATTCTTTTGCTCCTTCCACCTCAGCTACTcagtttttttgggggtttttttatatatgaaaATGTACAAACAATTAACTAGTAATTTTCAAGAGCTGCAAAGTCTGCCACTGAGGAACTCGGaagacttttgaaaaaaaacattaagaatAAAGTAATACGTGTTCTCATCATTTAAAACATCCAAGGAATTAGGCTCTGGTCTTTTGCAGGCTTGTTTTTTGTATGTAAGAATAGTGTTTACCGCTGCttcctctgtgtgtctttgtgaaaTATCTGTGGAATTTTTCTCCCCAAAGTTCCTTTTCAGTCTCTCACTGAAATGGATGGCaataaaagagagggagagaggaagaaggacTGAAGAGACAATTCATTTTGAAGGACTGAACCGGAGTGCAGTTTGACGTTTGATAAAGAATATTAACTGGTTGGAACAGTGCGCCCTGTCCCACAAGAATCACAAAGAACTTCGCTCTTCTCCAGGCAGAAGTAAAAAATTAAGAAGCCAATCAAAATGGGActtgtgttcatattttttctcaCTGAGATGATGTAAAGGAGGAATATTTAGATTGCTGAATGCAGTGTTCTGCTCTGAATTAATCCCAACAaatgcatattttatttttgactgtGTGTGATTTGACAGGCAAACCTCTGCTGATATTCTAA

Function

symbol description
dcaf12 Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and microtubule organizing center. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to several human genes including DCAF12 (DDB1 and CUL4 associated factor 12).

NR:

description
DDB1- and CUL4-associated factor 12-like isoform X1

GO: NA

KEGG:

id description
K11803 DCAF12; DDB1- and CUL4-associated factor 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798044.1 True 2661 mRNA 0.50 9 10453933 10468155

Neighbor

gene id symbol gene type direction distance location
ubap1 ubap1 coding upstream 3040 10443283 ~ 10450893 (+)
nudt2 nudt2 coding upstream 26279 10425426 ~ 10427654 (+)
ell2 ell2 coding upstream 69218 10364849 ~ 10384715 (+)
LOC120557177 LOC104957060 coding upstream 93988 10356732 ~ 10359945 (+)
pcsk1 pcsk1 coding upstream 98314 10340680 ~ 10355619 (+)
ubap2a ubap2,LOC102784312 coding downstream 1230 10469385 ~ 10490050 (+)
mlnl NA coding downstream 31418 10499573 ~ 10502432 (+)
aqp7 aqp7,LOC104921067 coding downstream 60225 10528380 ~ 10532087 (+)
kiaa1328 NA coding downstream 68298 10536453 ~ 10553381 (+)
dnai1.2 dnai1 coding downstream 476033 10944188 ~ 10966216 (+)
G37238 NA non-coding upstream 202 10453485 ~ 10453731 (+)
G37215 ube2r2 non-coding upstream 19231 10402258 ~ 10434702 (+)
G37198 NA non-coding upstream 142770 10310067 ~ 10311163 (+)
G37186 NA non-coding upstream 193604 10257250 ~ 10260329 (+)
G37177 NA non-coding upstream 247176 10204789 ~ 10206757 (+)
G37337 NA non-coding downstream 58544 10526699 ~ 10526936 (+)
G37342 NA non-coding downstream 85877 10554032 ~ 10559006 (+)
G37363 NA non-coding downstream 192711 10660866 ~ 10661324 (+)
G37367 NA non-coding downstream 328824 10796979 ~ 10797424 (+)
G37370 kiaa1161,LOC103376128 non-coding downstream 442142 10910297 ~ 10915799 (+)
glrx glrx other upstream 57746 10387908 ~ 10396187 (+)
G37197 NA other upstream 143937 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 597277 9760233 ~ 9856656 (+)
G36744 NA other upstream 2225213 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 3147590 7288907 ~ 7306343 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 529075 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 883923 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 917029 11385184 ~ 11394398 (+)
G37597 NA other downstream 1312023 11780178 ~ 11805394 (+)
G37714 NA other downstream 1784911 12253066 ~ 12254974 (+)

Expression


Co-expression Network