ubap1 (ubap1)


Basic Information

Item Value
gene id ubap1
gene name ubap1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10443283 ~ 10450893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798045.1
TGGCGTCATACAGGAACCAGTGGAAGGGAGCTTGACAAATCAAGATGGCGTCCCACGCTGAAGCAGTAGATATATTTCAGTGTAAATAAAACTCATTCGCAGAATAGTTTAAATTTGAGTGCCACATCGACAATACGTCGCTTGGATTTTGAAAAAACAAGACGGAGCAGATACAGTCTCTAAATGGCTGCGAGGAAGTCTGGATCAGATGTATACAACAATGgACCCATCAGCTACCTTGATGAAGTTCCCTTCAAAATCAATGACAAATTCCGCTGCCCAGCCAAAGTGGGGCTGCCTGTTGGTTTCTGTCTCCCAGACTGTGGCTCCTTGCTGATGGACTCACAGTATGACTTTTCTCTGGAGAAGCGTAGTGTGCGTTGGGGGGTTGAACTGGCTGAGGCCAGAGCAGCAGAATCCAGAGCAGAAGAAGCAGCAGCCAAGCAGGAGGCAGAGAACAGAGAGTGCTTGGCACAGACCCAGGACATTGATGGCGATGGAGGGAAGAAACGCCGGTGTGCTGCAGAGGACCAGGACCTTCTACCGCCAGCGTTGAACCCCGTCCTGGCGGGGCTGAGCCATAACGCCATCCTCACTCCACTGCCTGCCCCAAGACTTGGCCCCAGGAACATCCAGCCTAGCACTCCCCAGCTGCACAGCCTCAACCTAGCCGACTTTGAGCGGGAAGAGGACCCCTTTGACAAGCTGGAGCTCAAAACTTTGGACGATAGGGAGGAGCTCAGGAACATCCTCCAGAGCCAGCCCCAACCTCAACCTCCTCCCTCTGTATCCTTACCAGAGGTTTCCCAGATAGGGCCAGTGTCACGTGGAAACAGCCCGTCTCCTCCCAGCACCAACACCAGCCTCACAGCCAAACCTGGCTTTACCCATAAACCCAATGGGTTGGTTGCCTTGCTGGACATGGACAGAGTTGGACAACCTGGGAGAACGGGGTTTGACGCAGATGATCGACCCTGTAACATCCGCTCTCTCACTTTTCCCAAGCTCTGTGATTCTGGTGACCCAGTGCCAGTAAGGTACAGCCCAATCCCTGCACCCATCCCGGCTTCTCGACAGAACCTACCCAATGGCAGCCCACTGACCATTCCCAAGACCCAAGTTATTGTTGCCCCTGAGCCAACTAGCCACACCAAGAGTGGCGCACCAAAACCGGCCAACCCAGGGTCAGGAACTGCTGGTCTGCCATGTGGCGGAGCCTTGCTCAGCATGACCCCCAGCGAGCGTCAGTGTGTGGAAACCCTTGTGGGCATGGGCTACTCTTATGAGGGTGTCCTACGGGCCATGCAGAGACAAGGGCAGAACGTGGAGCAGGTACTGGACTACCTGTTTGTCCATGGGCGTCTGTGTGAGCGGGGCTTCGATGCAAGTGCGGTGGAGGAATGTTTAGAGATGTACCAATGCTCAGAAGAAAAGGCCTTGCAGTTCCTTGAGCTAATGTCAAGATTTGGCGAAATGGGATTTCAGCGGGATGCCATCAAAGAAGTGCTGCTAGTCCACAACAATGATCAGGACAAGGCTCTAGAGGACCTGATGACTCGGGCTACAGCTAGCTGAGCCAAGCTAACCAGTCAACCAAAGCCCAGCCCAGGGCTTGCCTCCTGCTACTACCTGACACAGCCCCTTTCCTTCTGCCTACCCTATCACACCATGCCCTGTCCTTGCCTTGGCTGTGGAAGGGACAGCTGGGCGACAGTTGTATTTCTCTCTGTGCTAAAACATATTGTGTCtcagcacatttttttttaaagactgtgCCTAGAGTGGAGGGGGTCACAGTGTAACAATGCTTAATggtggtgttttcttttctaaGAAATCCTGGGGTTAGGTACCAGGATTTTGTACTGCAAGGGTATTCAAGAATGGGAAGAATGACTGAGCTGGAAAGGAGACACTGGAAGAATTGGGCTGTGGTGTTTTGGAAGCTGCAGGACCTAATGGAGAGCTGATGACAGGCTTTGAGTACATTACAGAAAGACCAATTTGAACTCTTGATACTCCCAAATGACTAAGCTGCCATCTTCCACTGCTCTGTGCAGACCTATTAAATGGTGGCGGGGCTTGAGGAGGCTCTCTTCAAACTGAAACAactaacattaaaagaaaaaaaaagaaaaaaaaaaaaaaaaagaggcttaGTTGCCAGACAGACAACTGACTTCAAGAAGTGCCCTCTCTGCTCTGGTTCCCTGCACCTACAGTAGTTCTGTTCTATTTtattctttcattcattcatgtctGTTGTTCTGTTCATTTGGGCACTTTTTCCATGTCATTTTAAAGATTCAATttatttgatttcttttttaggaACTGCATAATAGATCCTTAGTCACTATAACTCAGAAAATAAGAGATATTACTGCCTCAGTACGCTCGTTGACCTGCACTGGAATGGCTTGTTAGAGGAGTGGGGATAAATGGGGAAAGTTCCTCTGTAGAAAATAATAAGAAATCTCCCATAATCCACTGGCACTGATGTCATTAGATGCACACACATGTTTCATTATTGTCAACTTATTTAAAATAGTACACTGatactttcatttaaaaaaaattaagagtTTGATATAATGTTCGATATGTTAACTCACAAAAGTGACACTTTTAACTGTCATGGACTTCTGTTTGCAGACTGGAAATGAGTGAgtggttaaaaaatatataagtcAGGGTTGTTTTTGCAGCCACATTACAGTGCAATAGAGACGTTTCATATTGTGTGTCTGTTGACTGGCTCGTTGAGCCTCAAGTAATTGTCGGGGATAAGGAACGGTCTTCAAGCCTTGCTATAAATTTGGATGTAACTAGAAAAagtttcattcatttcaatgaTCTCAATCATTTATTCTCTGTAATTGGATTCCCACAAAATCTAAACAAACATGACTTTGGTTTGTTGACTTGTC

Function

symbol description
ubap1 Predicted to enable ubiquitin binding activity. Acts upstream of or within axon extension. Predicted to be located in cytosol and endosome. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human UBAP1 (ubiquitin associated protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24629 UBAP1; ubiquitin-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798045.1 True 2930 mRNA 0.47 7 10443283 10450893

Neighbor

gene id symbol gene type direction distance location
nudt2 nudt2 coding upstream 15629 10425426 ~ 10427654 (+)
ell2 ell2 coding upstream 58568 10364849 ~ 10384715 (+)
LOC120557177 LOC104957060 coding upstream 83338 10356732 ~ 10359945 (+)
pcsk1 pcsk1 coding upstream 87664 10340680 ~ 10355619 (+)
cd8a NA coding upstream 150235 10290070 ~ 10293048 (+)
dcaf12 dcaf12,LOC102784774 coding downstream 3040 10453933 ~ 10468155 (+)
ubap2a ubap2,LOC102784312 coding downstream 18492 10469385 ~ 10490050 (+)
mlnl NA coding downstream 48680 10499573 ~ 10502432 (+)
aqp7 aqp7,LOC104921067 coding downstream 77487 10528380 ~ 10532087 (+)
kiaa1328 NA coding downstream 85560 10536453 ~ 10553381 (+)
G37215 ube2r2 non-coding upstream 8581 10402258 ~ 10434702 (+)
G37198 NA non-coding upstream 132120 10310067 ~ 10311163 (+)
G37186 NA non-coding upstream 182954 10257250 ~ 10260329 (+)
G37177 NA non-coding upstream 236526 10204789 ~ 10206757 (+)
G37163 NA non-coding upstream 390946 10052128 ~ 10052337 (+)
G37238 NA non-coding downstream 2592 10453485 ~ 10453731 (+)
G37337 NA non-coding downstream 75806 10526699 ~ 10526936 (+)
G37342 NA non-coding downstream 103139 10554032 ~ 10559006 (+)
G37363 NA non-coding downstream 209973 10660866 ~ 10661324 (+)
G37367 NA non-coding downstream 346086 10796979 ~ 10797424 (+)
glrx glrx other upstream 47096 10387908 ~ 10396187 (+)
G37197 NA other upstream 133287 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 586627 9760233 ~ 9856656 (+)
G36744 NA other upstream 2214563 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 3136940 7288907 ~ 7306343 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 546337 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 901185 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 934291 11385184 ~ 11394398 (+)
G37597 NA other downstream 1329285 11780178 ~ 11805394 (+)
G37714 NA other downstream 1802173 12253066 ~ 12254974 (+)

Expression


Co-expression Network