RNA id: XM_039798045.1


Basic Information

Item Value
RNA id XM_039798045.1
length 2930
RNA type mRNA
GC content 0.47
exon number 7
gene id ubap1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10443283 ~ 10450893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCGTCATACAGGAACCAGTGGAAGGGAGCTTGACAAATCAAGATGGCGTCCCACGCTGAAGCAGTAGATATATTTCAGTGTAAATAAAACTCATTCGCAGAATAGTTTAAATTTGAGTGCCACATCGACAATACGTCGCTTGGATTTTGAAAAAACAAGACGGAGCAGATACAGTCTCTAAATGGCTGCGAGGAAGTCTGGATCAGATGTATACAACAATGgACCCATCAGCTACCTTGATGAAGTTCCCTTCAAAATCAATGACAAATTCCGCTGCCCAGCCAAAGTGGGGCTGCCTGTTGGTTTCTGTCTCCCAGACTGTGGCTCCTTGCTGATGGACTCACAGTATGACTTTTCTCTGGAGAAGCGTAGTGTGCGTTGGGGGGTTGAACTGGCTGAGGCCAGAGCAGCAGAATCCAGAGCAGAAGAAGCAGCAGCCAAGCAGGAGGCAGAGAACAGAGAGTGCTTGGCACAGACCCAGGACATTGATGGCGATGGAGGGAAGAAACGCCGGTGTGCTGCAGAGGACCAGGACCTTCTACCGCCAGCGTTGAACCCCGTCCTGGCGGGGCTGAGCCATAACGCCATCCTCACTCCACTGCCTGCCCCAAGACTTGGCCCCAGGAACATCCAGCCTAGCACTCCCCAGCTGCACAGCCTCAACCTAGCCGACTTTGAGCGGGAAGAGGACCCCTTTGACAAGCTGGAGCTCAAAACTTTGGACGATAGGGAGGAGCTCAGGAACATCCTCCAGAGCCAGCCCCAACCTCAACCTCCTCCCTCTGTATCCTTACCAGAGGTTTCCCAGATAGGGCCAGTGTCACGTGGAAACAGCCCGTCTCCTCCCAGCACCAACACCAGCCTCACAGCCAAACCTGGCTTTACCCATAAACCCAATGGGTTGGTTGCCTTGCTGGACATGGACAGAGTTGGACAACCTGGGAGAACGGGGTTTGACGCAGATGATCGACCCTGTAACATCCGCTCTCTCACTTTTCCCAAGCTCTGTGATTCTGGTGACCCAGTGCCAGTAAGGTACAGCCCAATCCCTGCACCCATCCCGGCTTCTCGACAGAACCTACCCAATGGCAGCCCACTGACCATTCCCAAGACCCAAGTTATTGTTGCCCCTGAGCCAACTAGCCACACCAAGAGTGGCGCACCAAAACCGGCCAACCCAGGGTCAGGAACTGCTGGTCTGCCATGTGGCGGAGCCTTGCTCAGCATGACCCCCAGCGAGCGTCAGTGTGTGGAAACCCTTGTGGGCATGGGCTACTCTTATGAGGGTGTCCTACGGGCCATGCAGAGACAAGGGCAGAACGTGGAGCAGGTACTGGACTACCTGTTTGTCCATGGGCGTCTGTGTGAGCGGGGCTTCGATGCAAGTGCGGTGGAGGAATGTTTAGAGATGTACCAATGCTCAGAAGAAAAGGCCTTGCAGTTCCTTGAGCTAATGTCAAGATTTGGCGAAATGGGATTTCAGCGGGATGCCATCAAAGAAGTGCTGCTAGTCCACAACAATGATCAGGACAAGGCTCTAGAGGACCTGATGACTCGGGCTACAGCTAGCTGAGCCAAGCTAACCAGTCAACCAAAGCCCAGCCCAGGGCTTGCCTCCTGCTACTACCTGACACAGCCCCTTTCCTTCTGCCTACCCTATCACACCATGCCCTGTCCTTGCCTTGGCTGTGGAAGGGACAGCTGGGCGACAGTTGTATTTCTCTCTGTGCTAAAACATATTGTGTCtcagcacatttttttttaaagactgtgCCTAGAGTGGAGGGGGTCACAGTGTAACAATGCTTAATggtggtgttttcttttctaaGAAATCCTGGGGTTAGGTACCAGGATTTTGTACTGCAAGGGTATTCAAGAATGGGAAGAATGACTGAGCTGGAAAGGAGACACTGGAAGAATTGGGCTGTGGTGTTTTGGAAGCTGCAGGACCTAATGGAGAGCTGATGACAGGCTTTGAGTACATTACAGAAAGACCAATTTGAACTCTTGATACTCCCAAATGACTAAGCTGCCATCTTCCACTGCTCTGTGCAGACCTATTAAATGGTGGCGGGGCTTGAGGAGGCTCTCTTCAAACTGAAACAactaacattaaaagaaaaaaaaagaaaaaaaaaaaaaaaaagaggcttaGTTGCCAGACAGACAACTGACTTCAAGAAGTGCCCTCTCTGCTCTGGTTCCCTGCACCTACAGTAGTTCTGTTCTATTTtattctttcattcattcatgtctGTTGTTCTGTTCATTTGGGCACTTTTTCCATGTCATTTTAAAGATTCAATttatttgatttcttttttaggaACTGCATAATAGATCCTTAGTCACTATAACTCAGAAAATAAGAGATATTACTGCCTCAGTACGCTCGTTGACCTGCACTGGAATGGCTTGTTAGAGGAGTGGGGATAAATGGGGAAAGTTCCTCTGTAGAAAATAATAAGAAATCTCCCATAATCCACTGGCACTGATGTCATTAGATGCACACACATGTTTCATTATTGTCAACTTATTTAAAATAGTACACTGatactttcatttaaaaaaaattaagagtTTGATATAATGTTCGATATGTTAACTCACAAAAGTGACACTTTTAACTGTCATGGACTTCTGTTTGCAGACTGGAAATGAGTGAgtggttaaaaaatatataagtcAGGGTTGTTTTTGCAGCCACATTACAGTGCAATAGAGACGTTTCATATTGTGTGTCTGTTGACTGGCTCGTTGAGCCTCAAGTAATTGTCGGGGATAAGGAACGGTCTTCAAGCCTTGCTATAAATTTGGATGTAACTAGAAAAagtttcattcatttcaatgaTCTCAATCATTTATTCTCTGTAATTGGATTCCCACAAAATCTAAACAAACATGACTTTGGTTTGTTGACTTGTC

Function

GO: NA

KEGG:

id description
K24629 UBAP1; ubiquitin-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49915 lncRNA upstream 8581 10402258 ~ 10434702 (+) False G37215
TU49917 lncRNA upstream 8581 10402258 ~ 10434702 (+) True G37215
TU49907 lncRNA upstream 47126 10387912 ~ 10396157 (+) False glrx
TU49897 lncRNA upstream 132120 10310067 ~ 10311163 (+) True G37198
TU49881 lncRNA upstream 182954 10257250 ~ 10260329 (+) True G37186
TU49950 lncRNA downstream 2592 10453485 ~ 10453731 (+) True G37238
TU50098 lncRNA downstream 75806 10526699 ~ 10526936 (+) True G37337
TU50106 lncRNA downstream 103139 10554032 ~ 10559006 (+) True G37342
TU50132 lncRNA downstream 209973 10660866 ~ 10661324 (+) True G37363
TU50136 lncRNA downstream 346086 10796979 ~ 10797424 (+) True G37367
XM_039799095.1 mRNA upstream 15629 10425426 ~ 10427654 (+) False nudt2
XM_039799094.1 mRNA upstream 15629 10425433 ~ 10427654 (+) True nudt2
XM_039798071.1 mRNA upstream 47096 10387908 ~ 10396187 (+) True glrx
XM_039797265.1 mRNA upstream 58568 10364849 ~ 10384715 (+) True ell2
XM_039797264.1 mRNA upstream 83338 10356732 ~ 10359945 (+) True LOC120557177
XM_039798044.1 mRNA downstream 3040 10453933 ~ 10468155 (+) True dcaf12
XM_039798041.1 mRNA downstream 18492 10469385 ~ 10490050 (+) False ubap2a
XM_039798043.1 mRNA downstream 18492 10469385 ~ 10490050 (+) False ubap2a
XM_039798042.1 mRNA downstream 18736 10469629 ~ 10490050 (+) True ubap2a
XM_039798049.1 mRNA downstream 48680 10499573 ~ 10502432 (+) True mlnl
TU49895 other upstream 133287 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 1620552 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1620975 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1626886 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1635595 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 546337 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 901185 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 939846 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1329285 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1802173 12253066 ~ 12254974 (+) True G37714

Expression Profile