RNA id: TU50098


Basic Information

Item Value
RNA id TU50098
length 238
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G37337
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10526699 ~ 10526936 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caggcctataggcggcgctgtttctgctacagaaattcaccaaaaacggagaagaagagcatagtcacttccacttcccatcataacatgactagattataacgttctcttaatacatccgtggactataatcactttcaccactgctcattttataaaggctgccgtctttgtttacattgtataatgtgctgttggattgccttttattttgcatgattgcagcgcgctagtagCG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49950 lncRNA upstream 72968 10453485 ~ 10453731 (+) True G37238
TU49915 lncRNA upstream 91997 10402258 ~ 10434702 (+) False G37215
TU49917 lncRNA upstream 91997 10402258 ~ 10434702 (+) True G37215
TU49907 lncRNA upstream 130542 10387912 ~ 10396157 (+) False glrx
TU49897 lncRNA upstream 215536 10310067 ~ 10311163 (+) True G37198
TU50106 lncRNA downstream 27096 10554032 ~ 10559006 (+) True G37342
TU50132 lncRNA downstream 133930 10660866 ~ 10661324 (+) True G37363
TU50136 lncRNA downstream 270043 10796979 ~ 10797424 (+) True G37367
TU50139 lncRNA downstream 383361 10910297 ~ 10915799 (+) True G37370
TU50148 lncRNA downstream 401541 10928477 ~ 10929384 (+) True LOC120557560
XM_039798049.1 mRNA upstream 24267 10499573 ~ 10502432 (+) True mlnl
XM_039798041.1 mRNA upstream 36649 10469385 ~ 10490050 (+) False ubap2a
XM_039798043.1 mRNA upstream 36649 10469385 ~ 10490050 (+) False ubap2a
XM_039798042.1 mRNA upstream 36649 10469629 ~ 10490050 (+) True ubap2a
XM_039798044.1 mRNA upstream 58544 10453933 ~ 10468155 (+) True dcaf12
XM_039797461.1 mRNA downstream 1444 10528380 ~ 10532087 (+) False aqp7
XM_039797460.1 mRNA downstream 1447 10528383 ~ 10532087 (+) True aqp7
XM_039797459.1 mRNA downstream 9517 10536453 ~ 10553381 (+) True kiaa1328
XM_039798630.1 mRNA downstream 417252 10944188 ~ 10966216 (+) True dnai1.2
XM_039798628.1 mRNA downstream 417252 10944188 ~ 10965556 (+) False dnai1.2
TU49895 other upstream 216703 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 1703968 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1704391 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1710302 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1719011 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 470294 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 825142 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 863803 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1253242 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1726130 12253066 ~ 12254974 (+) True G37714

Expression Profile