RNA id: XM_039798044.1


Basic Information

Item Value
RNA id XM_039798044.1
length 2661
RNA type mRNA
GC content 0.50
exon number 9
gene id dcaf12
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10453933 ~ 10468155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGCGGCTGCGCGCTGCTCAATGCTTTCGCCGTTGCTGACGCGAGTGGTCAGGAAAACGGAGTGTGTGTAGCTACTCTCTGGCAGCTAGCTAGTTAACGAAGGCCAGAGTGTAGTATTAGTTGGGAGCGTAGGGGACGAGGTAATGATAGTGAGTCAGCGGCAATAACCAGCTTGTTACCAACCTCTCCCGTATGTGATCGCCCTTGCTCGTCGTCGGACGCTGCCAGCGAGGGCCAAGGAACAAAATAGCATATCGCCATTATATGATCCAGTGTCCAGCGTCACTTTTACCCTCCATGTGGGTGAGGGAACTGTGTGTATCAGATTATGGCGAGAAAAACAGTTAGCAGGAAAAGGAAGGCAGGAGAGCCCAAAGACCAACAACAGCTGGGCTGGTGTCAAGCGCCACACAAGCGGAGCCGTGTTTCTTGTTCATCACGTCACGCCCAGCAGTGGTGGTGCAGTCGGCGCTCGGTGGTATGTGCTCTCCGGGGGCGGGAGTTCAGACCTCAACAGCAGCATGAGTTGCGGCTCCAGCGGAGCCTTCAGGGTTTTGCGGCTGGCAGGCTCCCCGGCATCCTCAAGGAGAGGGAGTTCTCCCTGGGGCGACTCAACAAGGTGTTTGCTTCACAGTGGCTCAACCACAGGCAGGTGGTATGCGGGACCAAGTGCAACACGCTTTTTGTAGCTGATGTCCTGACGGGGCAGATAACGCGCATTCCCATGCTGAAGGACAGGGAGTGTCATGGTGGAGGCTCTGGGGTTGCGGGTGCAGTGGTGGCGGGGCGGCATTACCACCCCATAGCAGGCTCTCGTGCCCGGCTGGACCAGCAGGGTTGTGGGATCCACGCTATTGAACTCAACCCCTCCAGAACACTGCTAGCCACCGGAGGAGACAACCCCAACAGCCTGGCCATCTACCAGCTGCCCACACTGGACCCTGTTTGTGTGGGAGATGAAGGTCACAATGATTGGATCTTCTCCATAGCATGGATCAGTGACAATATGGCGGTTTCTGGGTCCAGAGATGGCTCCATGGGCCTGTGGGAGGTGACCGAGGACGTAATGAGCCAGGCTGAACGCAGTCAGAATGAGGAGGCAGTACCTTCATACGCCCACATCTCCCACCGTGCCCTCAAGGACATCCCAAAGGAGTACACCAACCCATACAACTGTAAAGTCCGTGCACTGGCCTTCAACAACAATCATAAAGAGCTGGGTGCTGTCTCTTTGGATGGCTATTTCCACCTTTGGAAAGCTGAGCACAACTTGTGCAAGATACTCTCCACCAAGCTGCCTCACTGCAAAGAGAATGTGTGTTTGGCATATGGACAGGACTGGTCCGTGTACGCGGTGGGTTCTCAGGCCCATGTTTCCTTTCTGGATCCACGGCAGCCTACACACAGCATCAAGTCTGTCAATTCCAGAGAGAGGGGAAGCGggatcCGTTCAGTGAGTTTCTACGAGCACATTGTTACAGTGGGCACCGGCCAAGGTTCCCTTCTCTTCTACGACATCCGGGCCCAGAGATTCTTGGAGAACCCTTTGAATCCAGCCGGAGGGTACCGAAAGTGCCCAGGAGATGGCATACTCAAACTCTCTACAGGGAAAGGCTGGCTGAATCACGATGAGACGTGGAGAAGTTACTTCTCAGACATTCATTCCTTCCCCAACGCGGTGTACACCCACTGCTACGACGACTCTGGCACCAAGCTGTTTGTAGCGGGTGGACCACTCTGTTCTGGCCTGCACGGCAACTACGCAGGACTGTGGAGCTAGCCTCTTcgtcttctccctccctctatcaCTACATCCTCGTCCAGATTTATTCCTAACCAGTCCCTCCATCCCTCTTCTTCTACAAGTCACTCTGTTTTGCTCACACATGGACTCAGGAGCATGATTTTGCCCCCCCACAGTATCACAGCTTTGAATATTGTGTAGGTTTGTGTCCACTTTTACACTATACCTTTCTCCTCCAATTATTCTTTTGCTCCTTCCACCTCAGCTACTcagtttttttgggggtttttttatatatgaaaATGTACAAACAATTAACTAGTAATTTTCAAGAGCTGCAAAGTCTGCCACTGAGGAACTCGGaagacttttgaaaaaaaacattaagaatAAAGTAATACGTGTTCTCATCATTTAAAACATCCAAGGAATTAGGCTCTGGTCTTTTGCAGGCTTGTTTTTTGTATGTAAGAATAGTGTTTACCGCTGCttcctctgtgtgtctttgtgaaaTATCTGTGGAATTTTTCTCCCCAAAGTTCCTTTTCAGTCTCTCACTGAAATGGATGGCaataaaagagagggagagaggaagaaggacTGAAGAGACAATTCATTTTGAAGGACTGAACCGGAGTGCAGTTTGACGTTTGATAAAGAATATTAACTGGTTGGAACAGTGCGCCCTGTCCCACAAGAATCACAAAGAACTTCGCTCTTCTCCAGGCAGAAGTAAAAAATTAAGAAGCCAATCAAAATGGGActtgtgttcatattttttctcaCTGAGATGATGTAAAGGAGGAATATTTAGATTGCTGAATGCAGTGTTCTGCTCTGAATTAATCCCAACAaatgcatattttatttttgactgtGTGTGATTTGACAGGCAAACCTCTGCTGATATTCTAA

Function

GO: NA

KEGG:

id description
K11803 DCAF12; DDB1- and CUL4-associated factor 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49950 lncRNA upstream 202 10453485 ~ 10453731 (+) True G37238
TU49915 lncRNA upstream 19231 10402258 ~ 10434702 (+) False G37215
TU49917 lncRNA upstream 19231 10402258 ~ 10434702 (+) True G37215
TU49907 lncRNA upstream 57776 10387912 ~ 10396157 (+) False glrx
TU49897 lncRNA upstream 142770 10310067 ~ 10311163 (+) True G37198
TU50098 lncRNA downstream 58544 10526699 ~ 10526936 (+) True G37337
TU50106 lncRNA downstream 85877 10554032 ~ 10559006 (+) True G37342
TU50132 lncRNA downstream 192711 10660866 ~ 10661324 (+) True G37363
TU50136 lncRNA downstream 328824 10796979 ~ 10797424 (+) True G37367
TU50139 lncRNA downstream 442142 10910297 ~ 10915799 (+) True G37370
XM_039798045.1 mRNA upstream 3040 10443283 ~ 10450893 (+) True ubap1
XM_039799095.1 mRNA upstream 26279 10425426 ~ 10427654 (+) False nudt2
XM_039799094.1 mRNA upstream 26279 10425433 ~ 10427654 (+) True nudt2
XM_039798071.1 mRNA upstream 57746 10387908 ~ 10396187 (+) True glrx
XM_039797265.1 mRNA upstream 69218 10364849 ~ 10384715 (+) True ell2
XM_039798041.1 mRNA downstream 1230 10469385 ~ 10490050 (+) False ubap2a
XM_039798043.1 mRNA downstream 1230 10469385 ~ 10490050 (+) False ubap2a
XM_039798042.1 mRNA downstream 1474 10469629 ~ 10490050 (+) True ubap2a
XM_039798049.1 mRNA downstream 31418 10499573 ~ 10502432 (+) True mlnl
XM_039797461.1 mRNA downstream 60225 10528380 ~ 10532087 (+) False aqp7
TU49895 other upstream 143937 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 1631202 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1631625 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1637536 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1646245 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 529075 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 883923 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 922584 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1312023 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1784911 12253066 ~ 12254974 (+) True G37714

Expression Profile