RNA id: XM_039797265.1


Basic Information

Item Value
RNA id XM_039797265.1
length 2593
RNA type mRNA
GC content 0.51
exon number 12
gene id ell2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10364849 ~ 10384715 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTGGGCTGCTAAAATGCTCCAGCCTCAAAGGGACGATGGTGGAGGGCTGGTAAAGATGGCGGCGCTCTCCGAGGATGGGAGGTACGGATTAAATTGTGGCCAAGAGAGCGCAGATAGAGTCACCGTATTACACGTCAAATTGACCGAGACAGCGCTGAGAGCAATAGAGAGCTACCAAAATTGTATGAATGTACCTTCTTTGCAGCCAACAATACAATTCAAGGGACTCCAAGGGcGCGTTAAAATTCCCAAGACTGATTCCTCCTCCGACACCTTCCACAGTTTTGATTTCTACCTGTCTAATGTGGGCAAGGACAACCCTCAGGGAAGCTTTGAGTGCATCCATCAGTATGTGTCAAGCTCAGGGGCCTCACACCTGGCATTGTTGGCGACCGTACAGGACAAGGTCACAGTGTGTGCCACTAATGACTCCTACCAGGTGACCCGGGAACGCATGACCCAGGCCGTGGAGGACACACGTGAACGTGGGACCAAAGTCATCAAGCCTGGGGGCCAGTACAGAGGAAAGCAAGTCCATATCCGTAAGCCGGCGCTATCAGCCCCAGATGTGGTCCCAGAGCGCAAGCGCTCCACACCCATCAACCCAGCCAACACTATTCGTAAGTGCCTTTCCAATAACCCTGTGTCCCAGCGGCCGTTCCGGGACCGCATCATCCACCTGATGGCACTGAGGTCCTACAAGAAGCTGGAAGTGCTTGCCCGTTTGCAACGGGATGGTATTAACCAGAAGGACAGAAACTCATTGGGGACCACCCTGCAACAGGTGGCAAACCTGAACCCCAAAGACAACACATATTCCTTGAAGGACTTTATTTATCGTGATGTCCAGCGAGACTGGCCTGGCTACTCTGAAGATGAAAAGTCCCAGGTTGACCGGATCCTGGCTCGCAAATCGGGGCTTCCTACTGAGACCCTCTCATCAAGCAGTCCTCCCAAAGACAGTGTCCCCACATCCCCCCAGAAGCGCCAGTCAGACTTTGACTTCATTGATCCTTTGGCACCCAAGAAAGCCCGCATCTCCCACCTCAGCAATCGAGGGCCAGCCGcgtcttcatcctcctcctctgacCGCCGTGAGGACGAAGGCAGCCCCAGCTCTAAACACTCGTCCCTACCTTCCAATGTCACCTCTGGCCCTCCCACTCATCTCCCCATCTCGTCCCACCCCCCTGCACCCTCTCACCAGCAGCCCAGCCCAGCCTCCAACTCCAACTCACCCAGCACCCCGGAGGGCTGTGGCACCCAGGACCTGCCTATGGACCAGAGTTCCTCCTGCAGAGACCCTTCACCCAGCCCCTTCTCCTCCGATAGGACCCTGCAGGACCGCTATCGACACCCTGTCCCCGTCCCAAGACCAGCCGCCTCCCCCAGCCCTCCTCTTCCCCCTGCCCCTCCTCCTTGCACCTCACTCACAGTTACCTCCACTGTCATCACCAGCCCCCCCTTGTCCAGCAGTACCAACAAgaagtttaaaaagaaatccaaGAAGCACAAAGATAAGGATCGAGAGAGGGATAAAGGGAAACGGACAGAAAAAGGTAGCAGAAGTCCTCCCAGTGTAGCAGAGCAAGCTGAAGAAACTCGTAGAGCCAAAAAGAAGCGaagtgctgaggaggagagcagAGACGTTATCAACAAGAATCCTCACAAAGATCAAGACTCATCAGAAAAAGAGAAGCCAGTTCAATCCACTGAATTCTCCTCCACAATTGAGATGCCTGACTATGTAGTGAAATACATGCCCATGGTGTCCATGGACCAGCGGCAAAGCTACAAGAATGACTTCAACGCCGAGTACGATGAGTATCGCCTGCTACATGCCCGTGTGGAGAACATCACCCGCCGCTTTACCCAGCTGGATGCCAAGTGCCGGAAGCTGGCACCTGGCACCAAAGAATACCAGaagGTGCAAGAAGAAGTCTTGAAAGAGTACAAAAAGATGAAACAAcaCAGCCCCAACTACCACGAGGAGAAACAGCGCTGCGAGTACCTGCACAACAAGTTGGCCCACATCAAGCGGCTAATAGCTGATTTTGACCAGCGCAGAGCCCAGGCCTGGAGCTGAGATCACAGCACACATCATCTTCACTAATCAGTATTGAGAAAAGGAGTGTCGAACCAGGAGAGGGTGTCTAACTGGCTGTTATTTATTAACACCCCTTCAGTTACTGCCTCCACAACAGCCCCTCCCCCACCACCTGTCTTCCTTCCCTTTTTCCTTTCTCATCGTCCTTTTTCATTCCTTGCTTCTTTTCCAATCTTTGATTCCACTGGCATCATTGTTGCCTGCAATCTTAATAATCTTACTTTGACTATACCCCCATCTTTTGCTTTCTCCGTTTCTTCTCAATGAGCTCCTGTGGAATTTCATACCACTGGACCAGTGGAAGGGGCTACCTGCATGTGTGAAGGGGTTTGGGGAAAATCTTCAACGCTTCTAACTTTTGAAGGACTTTATCttcaggcaaaaaaaaagaacaaaagtatTTTTGAGTATCAGAGAAAATATTAACTtgtatttaagtaaaaaaaaaaaaagagggagatcTATTTATTTTGGGACTCGCAG

Function

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0008023 transcription elongation factor complex cellular_component

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49897 lncRNA upstream 53686 10310067 ~ 10311163 (+) True G37198
TU49881 lncRNA upstream 104520 10257250 ~ 10260329 (+) True G37186
TU49882 lncRNA upstream 104520 10257250 ~ 10260329 (+) False G37186
TU49868 lncRNA upstream 158092 10204789 ~ 10206757 (+) True G37177
TU49854 lncRNA upstream 312512 10052128 ~ 10052337 (+) True G37163
TU49907 lncRNA downstream 3197 10387912 ~ 10396157 (+) False glrx
TU49915 lncRNA downstream 17543 10402258 ~ 10434702 (+) False G37215
TU49917 lncRNA downstream 17543 10402258 ~ 10434702 (+) True G37215
TU49950 lncRNA downstream 68770 10453485 ~ 10453731 (+) True G37238
TU50098 lncRNA downstream 141984 10526699 ~ 10526936 (+) True G37337
XM_039797264.1 mRNA upstream 4904 10356732 ~ 10359945 (+) True LOC120557177
XM_039797263.1 mRNA upstream 9230 10340680 ~ 10355619 (+) True pcsk1
XM_039796784.1 mRNA upstream 71801 10290070 ~ 10293048 (+) True cd8a
XM_039796785.1 mRNA upstream 82329 10278453 ~ 10282520 (+) True cd8b
XM_039798955.1 mRNA upstream 89890 10267044 ~ 10274959 (+) True zmat1
XM_039798071.1 mRNA downstream 3193 10387908 ~ 10396187 (+) True glrx
XM_039799095.1 mRNA downstream 40711 10425426 ~ 10427654 (+) False nudt2
XM_039799094.1 mRNA downstream 40718 10425433 ~ 10427654 (+) True nudt2
XM_039798045.1 mRNA downstream 58568 10443283 ~ 10450893 (+) True ubap1
XM_039798044.1 mRNA downstream 69218 10453933 ~ 10468155 (+) True dcaf12
TU49895 other upstream 54853 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 1542118 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1542541 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1548452 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1557161 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 612515 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 967363 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1006024 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1395463 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1868351 12253066 ~ 12254974 (+) True G37714

Expression Profile