RNA id: TU50148


Basic Information

Item Value
RNA id TU50148
length 547
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120557560
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10928477 ~ 10929387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCCATGCAGACACTGGACACAGAGCAGCAGCACCACGGAGGCTACACTCAGGTCTCTCAGCAACATGATGTCACGTCCTGCCTGAGTTACGTAATGGTCTCAATCTATGCGGGAAGGTTGATGTTACAGTAAGAGACTACCATATTCTCAACCAACCTGGACATCCATAAGGAGGCTCCCACAGCTCCCACAGTTTACAATAATGTATTACCCATTAAGTCAGCTATGTTCTACTACTGGCACCATTTTGGCCATGGAAATGTCCCTCACCTGTCTCCCAGCGCTCCTGTCTCATGAGCCTTCTTACTACGTCTTCGTCAACTTCAGTGCTACTGCTTGCAGCGTGGACACAAACTAGCTCCTGGGAATCAGGGCGTCTTCTGTAGGTACAGCAGTTTGAAGCCGTCTGAAGAGCTGGTAGACAGGAGCACTTGAGAACTAACTGAGCCTGCATTGGAGACTTCACCCCTTAATCAGCCTGTCTGAAATATGTAAGACATTGTTTATCGcaaaaaaatgtacaattaaaAACTAACAGAAACACA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50139 lncRNA upstream 12678 10910297 ~ 10915799 (+) True G37370
TU50136 lncRNA upstream 131053 10796979 ~ 10797424 (+) True G37367
TU50132 lncRNA upstream 267153 10660866 ~ 10661324 (+) True G37363
TU50106 lncRNA upstream 369471 10554032 ~ 10559006 (+) True G37342
TU50098 lncRNA upstream 401541 10526699 ~ 10526936 (+) True G37337
TU50154 lncRNA downstream 7299 10936683 ~ 10943626 (+) True G37383
TU50183 lncRNA downstream 67846 10997230 ~ 11012909 (+) False G37397
TU50185 lncRNA downstream 67846 10997230 ~ 10998833 (+) True G37397
TU50343 lncRNA downstream 415356 11344740 ~ 11345059 (+) True G37521
TU50344 lncRNA downstream 417702 11347086 ~ 11347671 (+) True G37522
XM_039797459.1 mRNA upstream 375096 10536453 ~ 10553381 (+) True kiaa1328
XM_039797461.1 mRNA upstream 396390 10528380 ~ 10532087 (+) False aqp7
XM_039797460.1 mRNA upstream 396390 10528383 ~ 10532087 (+) True aqp7
XM_039798049.1 mRNA upstream 426045 10499573 ~ 10502432 (+) True mlnl
XM_039798042.1 mRNA upstream 438427 10469629 ~ 10490050 (+) True ubap2a
XM_039798630.1 mRNA downstream 14804 10944188 ~ 10966216 (+) True dnai1.2
XM_039798628.1 mRNA downstream 14804 10944188 ~ 10965556 (+) False dnai1.2
XM_039796291.1 mRNA downstream 99411 11028795 ~ 11050816 (+) True LOC120556651
XM_039798012.1 mRNA downstream 121726 11051110 ~ 11053203 (+) True LOC120557557
XM_039798353.1 mRNA downstream 124806 11054190 ~ 11098050 (+) False cita
TU49895 other upstream 618481 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2105746 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2106169 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2112080 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 2120789 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 67846 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 422694 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 461355 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 850794 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1323682 12253066 ~ 12254974 (+) True G37714

Expression Profile