RNA id: XM_039796291.1


Basic Information

Item Value
RNA id XM_039796291.1
length 5398
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC120556651
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11028795 ~ 11050816 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGCTCGACCTGAGGCGGGCAGAGGGGAGTGCCCGCTGGGTGTATAGGAGCAGTCTGACGTCTTGTAAGTGTGAATGACttggggagagagaaaaaaaaaaaaaacactgacaacAGCTCAGCAGGCGAGACGATCGCGAAAAACTGaggaacatttttattttggaacTTCTTCCCGCTTCCTTCCTCCACCTGTAGCCTATGACTGCGTGAAGACCAAAGTGACTCAGTTATGGAGAGCTCCTTTGAGATTTCCCAGACTGGTGGCACCTCAAACCCCAAGCCATCTCTGGCCCCCAAACCTCGGCTCACTCCCAAGCCCTTCTCTCTGCAGAAGAACACCACCATTCGCTCCATCCATGCCCCAAAGAGGGTGGCTGTAACCTCTAAGACAACAACACAGCAGACTGGAAAATCGGAGGCCTCAGGTGTCCCCAAACCGTCTGTCTCCACCCCCGCTCAGAAACTCCCTCAACAAACCACCACCTCGGATTCCAAACCCAGCTCTGTAAGTGTGCTCACCAAAGATAAACCGAAACCAACCAAAGAAAGCAAAGCAAGTCCATATGGAGAGGATACTCTTGATTCTAGTGTAGGAAAATCAGATCCAGCCTCACGAACCGCTCCACCCAAAGAGACACCCAAGTCTGAGCCAATCCAGAGAGATGATGTCATCCAAGCAAACCACAAAGCATCCACTGATATTGTAAACTCAGAACAGATAGACGGAAAAAAGACAGAAGACATAACTCAGACGTCTATGGTCCAAACTGTTGAAGAATCAGGTAGTGACGTTTCCTCTACAGACAATCCAGCATATCGATGGGGCAACAGCAGGAAGCGTCTGTCCATGAAGCTCACATCGAAGTTTGAGTCAGCTGGCTCTCTACCCCCCCAGCCAAGTGTAACTGTCTCTACAACCAGCACCAAAGATGATGCACACAAGCCAGAGTCTTCAGATCCAGAGCCAAACCAGACAACATCAGAGCCGTCAAACGATGAAGGTGCACTAAAAGAGGATTACAGGGGAGGAGGCAGTATAAAACGCAGAATCAGTCTCCTGTTTGACTCGTCATCTAGGCCAGAGGCcatgacaaagagagaggagcCAGAAATTATAAATGGTACAGGCGTTGTAAAGGGTGTAAAGGAGAGAATCAAAACCTGGGCCACGGAAACGATCCCTGAGGGTCCAAAGACTGAAAAGAAGCCTCAGGTTGCACCCCGAACTCGCTCTAAAAGCCAGGAGCCACCAACTGCTCCAACAGGAGAGAAAACAACCAAAATTCCGCCTGTTGAACCTCAATCAACCGAGACATCGGCCAGTCAGGCGGTGGATCTTCCTTCAAAGGTGTCACCTGCTGAACAACCCACAGAGACCCCGATGGAAACCTCTAAAGAGGCGCTCGCTGAAGTTAAGCCATCGGAAAACTTAAGAGAAACGTTAGGAGAGCCTCTGCAGAACAAATCAACAGAGGGGGGTGTCCAACTACGCAATCACAGCTCATTTACGACCCCCGCTGCCACTGATGAGGGAGACTCAGCTGCAAGTGAAAGTGCTCAACTTGCTCCAAAGAGGAACGATGTCAAACGCCGCTCTGTTCGCTTTGGTATCGTAGAGAGAGATGATGGTGGGCCTCCATTGATCCTGGGCTCAGCGTCTGATTCcagcgaagaagaagaagaagaagaggcttCTGGGGATGAAGCTGAGGAAGACATCCCTGTTCCAGTGCCTGTCTACAAAAGAGTAGGAGGTCTTCAAAAGAAGGATGCTGATGAAGTGCAAGAGCAAGAAAAGGAACGACTGAAACATTTGGAATTTGAGAAAAGACGGAGAGCAAAAGAGAACGAACAGGCAGGACTCAAGTTGGAAGAGGAGCGGAaacaaaaagaagaggaaagggagaaagaaaaggcaaggcagagggaagaggaggaaagggagagagagaggctgaaggAAGAGGAaatggagagacagagggtgGAGGAATGGGAGCGAGAAATGTtgaaagaagaggagagggaaaggaaaaggctgagagaagaagagatggagagggaaAGGCAGATGGAGTTGATgtggcagagacagagagaagaggaaagagagaaggcgacacagaaagaggagagaCTTAAACAAgatcaggaggagagggaaaaagagagaatgaAGGAGGAGGTGAGGAAAGAGGAGAAACTAAGGGAGGAAAGAGAACGACAAAGGCctagagaggaggaggagagattgATTCACAGCCACGAGGAATACAGATTGGAGGGAAAACTGAGAGAGAAGgaaatttataaaaagaaacaaagagaggaggagtgggAAAAAGAGTGGGTGAACAAGACggagaggcagagaggagaagaaggagagagggaaagagagaaagagttgGAGTTGATGtggcagagacagaaagaggaggacagggagagaggcGAacagaaagaagagagactcagacaagaggagagggagaaagaaagattaAGAAtggaggaaagagaaaaggagaggcaAAGGATGCTGAAAgagcagcaaaaaaaagaagaagagttgGAGAGAATGAGGCAAATAGAgatggagagacaaagagaggaaggaagaagggaagaggaaagaaagagacagatagagaaagaaagagcGGAGGAGCTGGAGAGAAAAATGCGAGAGGAATTGGACAGAAAGCGAGCACAACTGGAAGAAGAGCTACGATTGGAGGAcgagagaaagagggaagaacgAGAGAGTGCGGGGCCAAATTTAATCAGCTTTGACTCTGAAGATGTGCCTCGAAAGTCAGAATGGCCGTATTCCCCCTTAGTGAAAGCCTACGAGACGGGCGAGAGTCAGGTCGAAGTTGTTTACGATGACTTCTCTGTCAAACCGCCTCTGTTGAAGGTGGATTTTGACGACTTTTCAGTCAAACCAAAGAGATGGGGCTCGCAGGCTAAAGTGGAAACTAGTCCGCTCATCCAGAGTCGGCCAGCTGTCCCTGCGGATAAAGAGGAAGTTGAAGTGGTGGCACCCCTGGAGGTCAGTCCTCTGGAAAGTAAAGTGCCAGAGCAGGTGGAAAAACCAGGCAGCCCAAAACCTACATTAGCCCAGAAAAGACCAGAGGAAGAACAGCTCATCTCCATGGAGGTGGGGgagaagggggaggaggaggaggaggatgaggaggaggagacgcggagggaggaagaggaggagacaaTGGAAGATGAAGTGGACGAAGGAGACGAGCAGGAGAGTTCCCATAGTGACCCTAGTGCCTCTACGACCAGCTGTGTGAGCCTTTCAACCATGCAGTACTTCGGAGGGAAACTGTCGGCCGCCCAGCTGCAGGTGGCGGGCTGGGTCGGCAGCGTGCGACGTTCCTTGCAAGGGGCTCTGGAGCTGGTGTGGGGCACCGCAGAagagaagcagcagcaggaggaggaagaggaggataaagaggaggaagaagaaggtgaagacGGAACAGGAAGGTTTCAGAGAGCTATGTCACCGCTTCGTAGCTTCGCCAGACGTAGCAGGAGATCCCTGCGTCGCTTCTCCGTCAGAAGTCGGCAGACTCTGCAGAGGAGAGCCACTGCAACCTGCTCTgCACCAGTTAACAGCACAAACGATGAAGACACTGATGCATTGATAGACAATGAGCCAGACCAGCAGAATGAGGCTTGTGAACAGACATCTGAAATTGACAgCCCAAAGCCCGTCCCTGACCAGGTTCCTGAAGTCCCCTCTGAAGACGTTGATACCATTGATTTTTACAGAGAGCCTGAGCTGGCTCCATTTCCGGAGAGCTCCACTCCTCTCCTCGACACCAGCGTGCAGAAATCGAAGGCAGATCTGGGTAGGAGGCGAACTCGAACGCGTCAGTCACGCTCGCTCCATGGAGGTTTGGCTCCAAAGGAAAGCCCAGACTGGAGGACCTGTGACTCCACAGATGAAAAAGAGACATCTTCTAAGCAAAGGGAGTCAGACTCTGACGAGGAGCAGCCTAAACCGAAGATGGTCTGTTCTCCTCCTCCCACCTCTCAGAGAGTCCCCATGTTCCCTGGATTGAGCCCTGCAGCCTTGATTGCTCAGTTAAAAAAGAGAACAGGTGGAGGTGAAaccagaggaagagaggaaataGAAGAAGACaagggaagagaagagaaggaaaGTCAAAATGAGGAAGCGGCACCATCTCCCTCACAACGGTCCCGCTCTACTCGCTCTGCCGCTCATCTGGCAGGGGCTGCACGAGTGCTGCCACCCTTAGGCGGCACGGACGCAGGTGCCGTCTCCTCTCCCGCTTGGCTGAAAGAACTGAAGTCTAAGAAGCGCCTGAGTCAGTATGACAGCGAGGCTTAGCCAGACGCAGGAGACACGGTGCCATTGCTGTTCAGCAAGAATCAATCCAtctcagctgctgctgctgacggCAGACACCTTGCCACAATTGCTCCATTTTCCACTTTGAGTGCCTTATTTTGGACTTTTACTGATATATTCAGGGGGGGTTATTCATGGCTTTTGCTGAACGTAGAGGCCATCAGGAACTTTTCTAGTTTGTAAATGAAATATGGTGCCAAGGCTATGTGCCAAGACTGTGATGTGTTAATGCCAAGTACATGTTTTTCTACTgctgtacagaggctcagttgAGGGGGAATACCCCCAATGTAATTTAGAGCAAAGCCATGGACTGTCTTATTGTTTGAATGTGTTAGTCCATCATATACTGACAGGGACTGATGACACTAGgccttcacacatacacacaaacacacatatgtacatacAATACTGAATATAAATAATGGATTGCatcttgtgtgtatttgtagtatAAATTGTACAAAATGCCTTTTACATTATCTTTCCAATCACAGATTGTCTCAAGTAAACCTATAAGCACTTTAAGAAAAATTATAACAAATTACTatccatacagtacatgtatgcAATAGAATAGTCAAGTACCTAACTTAGTAACATGGTCAagggaatttaaaaaaaaaagtttgttacACTATGAATGTCTGTCTTCTCTTTCCAGTTCCACAAAACGTAAAGATGCACTTCCTGGTTTTTATTTAAACGCCCAGTACCTGGGGagaaccatggatgtattaagagaacgggtcAGAACATCACCAGTGAGCTGGGAGGAAATTTTGAGCATGCTATAACACAATCAGGAagtgtgttttgtaaaattTTAAACCCAGAAAAATGCAATAATCTGCTTTGAATGCTTTTATGTGCCTTTTTAATGTTGAAGAGTGACTGTCATCATCAATGCTGTAATCATTTATGATATCAAGTATGATAAGAGGAAATTGAGGGAATTTTATTAAAACCTTTTCTATGAAATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50183 lncRNA upstream 15886 10997230 ~ 11012909 (+) False G37397
TU50185 lncRNA upstream 29962 10997230 ~ 10998833 (+) True G37397
TU50154 lncRNA upstream 85169 10936683 ~ 10943626 (+) True G37383
XR_005638986.1 lncRNA upstream 99408 10928504 ~ 10929387 (+) False LOC120557560
TU50148 lncRNA upstream 99411 10928477 ~ 10929384 (+) True LOC120557560
TU50343 lncRNA downstream 293924 11344740 ~ 11345059 (+) True G37521
TU50344 lncRNA downstream 296270 11347086 ~ 11347671 (+) True G37522
TU50345 lncRNA downstream 298320 11349136 ~ 11349368 (+) True G37523
TU50346 lncRNA downstream 298734 11349550 ~ 11349773 (+) True G37524
TU50348 lncRNA downstream 303460 11354276 ~ 11354743 (+) True G37526
XM_039798630.1 mRNA upstream 62579 10944188 ~ 10966216 (+) True dnai1.2
XM_039798628.1 mRNA upstream 63239 10944188 ~ 10965556 (+) False dnai1.2
XM_039797459.1 mRNA upstream 475414 10536453 ~ 10553381 (+) True kiaa1328
XM_039797461.1 mRNA upstream 496708 10528380 ~ 10532087 (+) False aqp7
XM_039797460.1 mRNA upstream 496708 10528383 ~ 10532087 (+) True aqp7
XM_039798012.1 mRNA downstream 294 11051110 ~ 11053203 (+) True LOC120557557
XM_039798353.1 mRNA downstream 3374 11054190 ~ 11098050 (+) False cita
XM_039798352.1 mRNA downstream 3374 11054190 ~ 11098050 (+) True cita
XM_039798354.1 mRNA downstream 3374 11054190 ~ 11098050 (+) False cita
XM_039796504.1 mRNA downstream 49317 11100133 ~ 11103661 (+) True myl2a
TU50184 other upstream 30658 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 718799 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2206064 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2206487 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2212398 8816325 ~ 8816397 (+) True trnar-acg_14
TU50347 other downstream 301262 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 339923 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 729362 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1202250 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 1223944 12274760 ~ 12278624 (+) True LOC120557851

Expression Profile