LOC120560666 (selenop)


Basic Information

Item Value
gene id LOC120560666
gene name selenop
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24166092 ~ 24169695 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803386.1
AACAGGCAGAGTATAAAAGGGGGGAGCAGTGGAGGAAGAGACTTGTTTTTGTTCAAGGAGTTCCAACAACGCAGAGCTGAGCACAGAGGACAGAACTTTTTAACCGAAGGATTGGAGTAGTGAGGAGGCACCACAGGGATGTGGGCGTGCCTCAGCCTACTCATCACTCTCTGCCTGCTCCATGGGGGCGGAGCAGAGAGTGACGGGGGTGGGCCTCGCTGTCAGCTACCTCCAGCCTGGAAGATAGGGGAGGTGGAGCCAATGAATCAGGCGATGGGCCAGGTGACGGTGCTGGCCCTTTTCCAGGCCAGCTGATTGTTCTGCTTAGTGCAGGCTTCCAGAATGGATGACCTGCGCCAGAAGCTGGAGGGTCAGGGTCTGAAGGATGTGGTCTACATGGTCGTTAACCAGCAGGCGGAGCAAGCACGGCGCCTGCACACCATGCTGGCACAGAGACTGTCAGAGAACATCACACTCTACAAACAGGACGAGCAACAGCCTGATGTCTGGAAGACACTGAGCGGACAGAAAGATGACTTTCTCATTTATGACAGGTGTGGCCGTCTCACCCACCACATTTCTCTTCCATACTCCATCATTGGACACGGCCATGTTGAGGGTGCGATCAAAGACACCTACTGCAAACGCATATGTGGGGACTGCACTCATGAGAGCACTGAGACACCAGAAGGGTGCACAGAGAAAGCAGATGCACAGCCTGACGCAGACCCTACCCCAGCTGTAAAGGAAGACACTGGGCATGGTCACGGTCATGGTCATGGTCATGGTCATGGTCATGGTCACGGGCATGGTCACCACCACAGTCATCACCATGGGGTTAACCATGGTGTTCACCCCCGTGGCCATGATCACAACCATGGTCATCACCATGGAAGCCATGATGGTGCTGGCCAGCAAGGTGTTGGGCAACATAATTTAGATGTAGGCCAGACGCAGATGTCACAGGAGGCCCATCAAGTCCCTTTGAGGCCCTGAGTAAATGAAGCTAGGTGAAAGTCAAAGTACAGCTGACAGTGGAGAGCAGGCTCTGACAATGCAGCCTCTCCTAAAGCCAGCTGATGCTGACACTGACGCAGGCTGTTTGGCGATGCAGGGGGTGAGCAACTGGTCGGACTGTGACACTGTGATGAGGCGCTGCCCGCCTCCTGACTTTGACACGGGCCGAGAGGCGATACAGCCACTAATGTTGTGGAGACCTGACAGTGACGCTCGCCTCCTGCTGCCTGACAGCAGCCTCAGCCAGCCCAATGAGCCTGACCCCAAGGTGTGAGCTGA
>XM_039803388.1
AGTGGAGGAAGAGACTTGTTTTTGTTCAAGGAGTTCCAACAACGCAGAGCTGAGCACAGAGGACAGAACTTTTTAACCGAAGGCAGATTGGAGTAGTGAGGAGGCACCACAGGGATGTGGGCGTGCCTCAGCCTACTCATCACTCTCTGCCTGCTCCATGGGGGCGGAGCAGAGAGTGACGGGGGTGGGCCTCGCTGTCAGCTACCTCCAGCCTGGAAGATAGGGGAGGTGGAGCCAATGAATCAGGCGATGGGCCAGGTGACGGTGCTGGCCCTTTTCCAGGCCAGCTGATTGTTCTGCTTAGTGCAGGCTTCCAGAATGGATGACCTGCGCCAGAAGCTGGAGGGTCAGGGTCTGAAGGATGTGGTCTACATGGTCGTTAACCAGCAGGCGGAGCAAGCACGGCGCCTGCACACCATGCTGGCACAGAGACTGTCAGAGAACATCACACTCTACAAACAGGACGAGCAACAGCCTGATGTCTGGAAGACACTGAGCGGACAGAAAGATGACTTTCTCATTTATGACAGGTGTGGCCGTCTCACCCACCACATTTCTCTTCCATACTCCATCATTGGACACGGCCATGTTGAGGGTGCGATCAAAGACACCTACTGCAAACGCATATGTGGGGACTGCACTCATGAGAGCACTGAGACACCAGAAGGGTGCACAGAGAAAGCAGATGCACAGCCTGACGCAGACCCTACCCCAGCTGTAAAGGAAGACACTGGGCATGGTCACGGTCATGGTCATGGTCATGGTCATGGTCATGGTCACGGGCATGGTCACCACCACAGTCATCACCATGGGGTTAACCATGGTGTTCACCCCCGTGGCCATGATCACAACCATGGTCATCACCATGGAAGCCATGATGGTGCTGGCCAGCAAGGTGTTGGGCAACATAATTTAGATGTAGGCCAGACGCAGATGTCACAGGAGGCCCATCAAGTCCCTTTGAGGCCCTGAGTAAATGAAGCTAGGTGAAAGTCAAAGTACAGCTGACAGTGGAGAGCAGGCTCTGACAATGCAGCCTCTCCTAAAGCCAGCTGATGCTGACACTGACGCAGGCTGTTTGGCGATGCAGGGGGTGAGCAACTGGTCGGACTGTGACACTGTGATGAGGCGCTGCCCGCCTCCTGACTTTGACACGGGCCGAGAGGCGATACAGCCACTAATGTTGTGGAGACCTGACAGTGACGCTCGCCTCCTGCTGCCTGACAGCAGCCTCAGCCAGCCCAATGAGCCTGACCCCAAGGTGTGAGCTGA
>XM_039803389.1
ATGTGGGCGTGCCTCAGCCTACTCATCACTCTCTGCCTGCTCCATGGGGGCGGAGCAGAGAGTGACGGGGGTGGGCCTCGCTGTCAGCTACCTCCAGCCTGGAAGATAGGGGAGGTGGAGCCAATGAATCAGGCGATGGGCCAGGTGACGGTGCTGGCCCTTTTCCAGGCCAGCTGATTGTTCTGCTTAGTGCAGGCTTCCAGAATGGATGACCTGCGCCAGAAGCTGGAGGGTCAGGGTCTGAAGGATGTGGTCTACATGGTCGTTAACCAGCAGGCGGAGCAAGCACGGCGCCTGCACACCATGCTGGCACAGAGACTGTCAGAGAACATCACACTCTACAAACAGGACGAGCAACAGCCTGATGTCTGGAAGACACTGAGCGGACAGAAAGATGACTTTCTCATTTATGACAGGTGTGGCCGTCTCACCCACCACATTTCTCTTCCATACTCCATCATTGGACACGGCCATGTTGAGGGTGCGATCAAAGACACCTACTGCAAACGCATATGTGGGGACTGCACTCATGAGAGCACTGAGACACCAGAAGGGTGCACAGAGAAAGCAGATGCACAGCCTGACGCAGACCCTACCCCAGCTGTAAAGGAAGACACTGGGCATGGTCACGGTCATGGTCATGGTCATGGTCATGGTCATGGTCACGGGCATGGTCACCACCACAGTCATCACCATGGGGTTAACCATGGTGTTCACCCCCGTGGCCATGATCACAACCATGGTCATCACCATGGAAGCCATGATGGTGCTGGCCAGCAAGGTGTTGGGCAACATAATTTAGATGTAGGCCAGACGCAGATGTCACAGGAGGCCCATCAAGTCCCTTTGAGGCCCTGAGTAAATGAAGCTAGGTGAAAGTCAAAGTACAGCTGACAGTGGAGAGCAGGCTCTGACAATGCAGCCTCTCCTAAAGCCAGCTGATGCTGACACTGACGCAGGCTGTTTGGCGATGCAGGGGGTGAGCAACTGGTCGGACTGTGACACTGTGATGAGGCGCTGCCCGCCTCCTGACTTTGACACGGGCCGAGAGGCGATACAGCCACTAATGTTGTGGAGACCTGACAGTGACGCTCGCCTCCTGCTGCCTGACAGCAGCCTCAGCCAGCCCAATGAGCCTGACCCCAAGGTGTGAGCTGAGGATGAGAGCAGCTGTAAGCTGGCTCTGATATCAGCCTCATATTAATACCAGAAACATCGGGGCCAAGCACTCTTTTTACCAACAAGTATTGCCCTGGGAGAGGGCAGAGCAGTCCCTGACAGCATGCATATCAGATAGATGAACGTGAGTCTGAGATCACACTGATGAAGATTAAATAAAGTAGATAAACACATCAAGCAAAACATGCATTGGCGGCTTGTTAACTTGGAACATTTGGCAACAGGTATGCAAATAATTTGACTAAGCCTTAAAGAATATATGACTTGTTTCACCTGTCTCCGCTTGTCTGTCAGTGGGTTGCTCTCATCCTTTCTCAGAAGTGTAGTTGTTATGTTCACAAATGACCTCCTCcattttgctctctccatccttTATGAAACCAGGCGCAGAAACTACGCTCTAGTGGCGTCTGTATGAAGTCaggcaggagagagaggagagggtaGTTTAGGAACATGATAAATACTTTAAACATCTCAAAGTTCAGTATCTAAGGATATTTGagggaacagaaaaaaaattgattattAAAAATAGATAGATTCTTTAAATACTGCAAAAAAATAGGAAATTAGGCAGGGAGTTTAATAATTACCTGAAAGCACTGGCCCGCTACTGGGaaaaataagtcataaaaaacattttaaagcaaaTTGAGTTTATCCCAGTGATGTGTTTATCTGTAGCACATGCTATTGATCATTGTTCTTGATTACATGTAACGGCAGTAACTACCATGAATTactaattttttttacttaagtcaGCAAGCTTAAACATTTGGCAGGAGTATATTTTACCACATTTCAAATGTTGAATACTAGATGTTCCTGTATGTTTTCTTTGCATTTTCTGGATGTGCCTTGTAGGTTGCAaattacacacatttatacaaggcttgctaaaaaaaaaatcatgactCTATTATTTAGAAAAGGGCAGAGGGGAAATGAATGAAAGTGGAGCAATGAATGATGGTTGGAATACACTCAGTACTTAATGAAGGTTTCTGCGGGAAGATAACAATCACCTTGAAAATCTGATGCTTGTACAGAGAACTGTATTATGTTAAGGCTGTCAAACATGGAAACTGAGAGTTGAATACAAATGGTTGAGTTTCtttttgagtttgtgtgtgttcttggtGAAGTTGGAACATAAAAGTTGACCATTACTGAA
>XM_039803390.1
ATGTGGGCGTGCCTCAGCCTACTCATCACTCTCTGCCTGCTCCATGGGGGCGGAGCAGAGAGTGACGGGGGTGGGCCTCGCTGTCAGCTACCTCCAGCCTGGAAGATAGGGGAGGTGGAGCCAATGAATCAGGCGATGGGCCAGGTGACGGTGCTGGCCCTTTTCCAGGCCAGCTGATTGTTCTGCTTAGTGCAGGCTTCCAGAATGGATGACCTGCGCCAGAAGCTGGAGGGTCAGGGTCTGAAGGATGTGGTCTACATGGTCGTTAACCAGCAGGCGGAGCAAGCACGGCGCCTGCACACCATGCTGGCACAGAGACTGTCAGAGAACATCACACTCTACAAACAGGACGAGCAACAGCCTGATGTCTGGAAGACACTGAGCGGACAGAAAGATGACTTTCTCATTTATGACAGGTGTGGCCGTCTCACCCACCACATTTCTCTTCCATACTCCATCATTGGACACGGCCATGTTGAGGGTGCGATCAAAGACACCTACTGCAAACGCATATGTGGGGACTGCACTCATGAGAGCACTGAGACACCAGAAGGGTGCACAGAGAAAGCAGATGCACAGCCTGACGCAGACCCTACCCCAGCTGTAAAGGAAGACACTGGGCATGGTCACGGTCATGGTCATGGTCATGGTCATGGTCATGGTCACGGGCATGGTCACCACCACAGTCATCACCATGGGGTTAACCATGGTGTTCACCCCCGTGGCCATGATCACAACCATGGTCATCACCATGGAAGCCATGATGGTGCTGGCCAGCAAGGTGTTGGGCAACATAATTTAGATGTAGGCCAGACGCAGATGTCACAGGAGGCCCATCAAGTCCCTTTGAGGCCCTGAGTAAATGAAGCTAGGTGAAAGTCAAAGTACAGCTGACAGTGGAGAGCAGGCTCTGACAATGCAGCCTCTCCTAAAGCCAGCTGATGCTGACACTGACGCAGGCTGTTTGGCGATGCAGGGGGTGAGCAACTGGTCGGACTGTGACACTGTGATGAGGCGCTGCCCGCCTCCTGACTTTGACACGGGCCGAGAGGCGATACAGCCACTAATGTTGTGGAGACCTGACAGTGACGCTCGCCTCCTGCTGCCTGACAGCAGCCTCAGCCAGCCCAATGA

Function

symbol description
selenop Predicted to enable selenium binding activity. Acts upstream of or within selenium compound metabolic process. Located in extracellular region. Is expressed in several structures, including female organism; head mesenchyme; pronephric duct; yolk; and yolk syncytial layer. Orthologous to human SELENOP (selenoprotein P).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: selenoprotein P

GO:

id name namespace
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803386.1 False 1296 mRNA 0.55 5 24167293 24169695
XM_039803388.1 False 1272 mRNA 0.56 5 24167293 24169668
XM_039803389.1 True 2359 mRNA 0.47 4 24166092 24168924
XM_039803390.1 False 1134 mRNA 0.56 4 24167317 24168924

Neighbor

gene id symbol gene type direction distance location
oxct1a oxct1 coding downstream 61984 24049943 ~ 24104108 (-)
plcxd3 plcxd3 coding downstream 118338 24032140 ~ 24047754 (-)
c7a NA coding downstream 140195 24015113 ~ 24025897 (-)
LOC120561045 NA coding downstream 174962 23986097 ~ 23991130 (-)
htr1aa htr1a,LOC102795852,LOC103358896 coding downstream 183963 23980213 ~ 23982129 (-)
LOC120561047 NA coding upstream 129301 24298996 ~ 24300405 (-)
efna5b efna5,LOC103397673,LOC100702629 coding upstream 236483 24406178 ~ 24497987 (-)
fbxl17 fbxl17,LOC102776382 coding upstream 413593 24583288 ~ 24820851 (-)
LOC120560316 NA coding upstream 667966 24837661 ~ 24842186 (-)
slc35d2 slc35d2 coding upstream 679311 24849006 ~ 24855441 (-)
G64209 NA non-coding downstream 11413 24151066 ~ 24154679 (-)
G64206 NA non-coding downstream 20319 24145447 ~ 24145773 (-)
G64166 NA non-coding downstream 172226 23993613 ~ 23993866 (-)
G64165 NA non-coding downstream 172789 23992833 ~ 23993303 (-)
G64122 NA non-coding downstream 442911 23722937 ~ 23723181 (-)
G64214 NA non-coding upstream 3767 24173462 ~ 24173676 (-)
G64234 gadd45g,LOC102775619 non-coding upstream 44200 24213895 ~ 24215089 (-)
G64249 NA non-coding upstream 123320 24293015 ~ 24293599 (-)
G64250 NA non-coding upstream 123958 24293653 ~ 24293956 (-)
LOC120560057 NA non-coding upstream 875200 25044895 ~ 25047047 (-)
foxd5 LOC103358907,LOC104942959 other downstream 778787 23384718 ~ 23387305 (-)
smim15 smim15,LOC106580593,LOC103398561 other downstream 884964 23274919 ~ 23281128 (-)
G63882 LOC104956296,LOC101068944 other downstream 1333003 22830195 ~ 22833089 (-)
LOC120560435 idnk other downstream 2474542 21681976 ~ 21691550 (-)
rmi1 rmi1 other downstream 2539071 21616223 ~ 21627021 (-)
lzts3b lzts3,LOC102793849 other upstream 706900 24876595 ~ 24937440 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other upstream 831628 25001323 ~ 25016921 (-)
LOC120560369 LOC104950284,LOC103362719 other upstream 897065 25066760 ~ 25080769 (-)
mapkapk5 mapkapk5 other upstream 920240 25089935 ~ 25105430 (-)
commd10 commd10,LOC102791033 other upstream 1318787 25488482 ~ 25547852 (-)

Expression


Co-expression Network