Gene
RNA
| Item | Value |
|---|---|
| gene id | smn1 |
| gene name | LOC106520439 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053117.1 |
| NCBI id | CM020914.1 |
| chromosome length | 43979800 |
| location | 36675399 ~ 36685936 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| description |
|---|
| survival motor neuron protein 1-like |
| id | name | namespace |
|---|---|---|
| GO:0007528 | neuromuscular junction development | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0048675 | axon extension | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K13129 | SMN; survival motor neuron protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039804391.1 | True | 1173 | mRNA | 0.49 | 8 | 36675399 | 36685936 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lzts1 | lzts1 | coding | upstream | 14009 | 36632627 ~ 36661390 (+) |
| LOC120561138 | LOC103362151 | coding | upstream | 69083 | 36526718 ~ 36606316 (+) |
| bco2l | LOC100708996,LOC103398249 | coding | upstream | 153361 | 36508463 ~ 36522038 (+) |
| LOC120560019 | NA | coding | upstream | 197905 | 36469678 ~ 36477494 (+) |
| klf9 | LOC103362104 | coding | upstream | 229632 | 36441132 ~ 36445767 (+) |
| LOC120560592 | rtkn | coding | downstream | 5894 | 36691830 ~ 36770811 (+) |
| LOC120561092 | NA | coding | downstream | 85057 | 36770993 ~ 36782372 (+) |
| polr3g | polr3g | coding | downstream | 103812 | 36789748 ~ 36797174 (+) |
| adgrv1 | adgrv1 | coding | downstream | 117614 | 36803550 ~ 36979623 (+) |
| arsk | arsk | coding | downstream | 344605 | 37030541 ~ 37037965 (+) |
| G67326 | NA | non-coding | upstream | 65605 | 36606597 ~ 36609794 (+) |
| G67263 | NA | non-coding | upstream | 417486 | 36257706 ~ 36257913 (+) |
| G67219 | NA | non-coding | upstream | 546404 | 36120895 ~ 36128995 (+) |
| G67216 | NA | non-coding | upstream | 579276 | 36094815 ~ 36096123 (+) |
| G67202 | NA | non-coding | upstream | 615913 | 36055684 ~ 36059486 (+) |
| G67373 | NA | non-coding | downstream | 325902 | 37011838 ~ 37030131 (+) |
| G67394 | NA | non-coding | downstream | 621304 | 37307240 ~ 37310186 (+) |
| G67522 | NA | non-coding | downstream | 658526 | 37344462 ~ 37345076 (+) |
| G67530 | NA | non-coding | downstream | 697652 | 37383588 ~ 37383822 (+) |
| G67563 | NA | non-coding | downstream | 792203 | 37478139 ~ 37478868 (+) |
| trpm3 | trpm3,LOC103470491,LOC103145554,LOC106928040,LOC101476865,LOC100708457 | other | upstream | 182704 | 36241579 ~ 36492695 (+) |
| LOC120560081 | NA | other | upstream | 194088 | 36477798 ~ 36481311 (+) |
| G67152 | NA | other | upstream | 652135 | 35871423 ~ 36023264 (+) |
| G67145 | NA | other | upstream | 821238 | 35841534 ~ 35854161 (+) |
| G67146 | NA | other | upstream | 823343 | 35840874 ~ 35852056 (+) |
| LOC120560165 | LOC104964460,LOC103362321 | other | downstream | 1031967 | 37717903 ~ 37728705 (+) |
| si:ch211-214j8.12 | NA | other | downstream | 1623667 | 38309603 ~ 38323496 (+) |
| nkx6.3 | nkx6-3,LOC102787307,LOC104940825,LOC102218504 | other | downstream | 1669667 | 38355603 ~ 38407523 (+) |
| G67824 | NA | other | downstream | 1909875 | 38595811 ~ 38601821 (+) |
| G68023 | NA | other | downstream | 2724286 | 39410222 ~ 39461478 (+) |
