gfra2b (gfra2)


Basic Information

Item Value
gene id gfra2b
gene name gfra2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19853554 ~ 19943505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322558
AGTttgaacagaaatgtaaaagacGATGGGCTGAGGTGAGTTAACATGACTTCTTCATGAAGGATTTCTGAACCAACATCCATTTGTAGTTCCTAGATCAACTTTTCATTTAAgcgattaatttattttactgtcatCAGCGTGCGTCTCTGACTCCTCCCACTCCCGAACATCTTCAAAATTCCCAAATTGGTTAAAATGGAAAACCATCATGTAGCTCTTCATTGCAATTCATTGCAGTTCATGACtttaatacacactaacacagctaAATTTGAAGATGCATCTTTTTACATCCACactaaaacagtgaaaacataGTTTTTGACACTGATGCAAAGTCATGTGACCTCCGCAATTCCAAGATGGCGGATCCCCCGATCGATGCTGTTTTCTATATTAAGTATTCCAATTTCATGTTTGAATACTTTCTGTAGTGTATAAGCACACTGCTATCAATTATATTCTTGATGTCAAACGAAATGTCTTGatgtcaaatattttattttaatataataggtTTTTCACCCTGTGTGCGTACTTAGCAGGCTCTTTTCTATTGTTTCTGCATTTCATTGTGCATGGAACACTTTCAGGAAACGGACTGAATTCCCTAGTGTGGCCAAAAAAATTACCTTTTTCAAATGTGTTAGTATCGACTAGGTCATAGTTATCCAGTTAATCCCAAACCCAGAAGCCAGCTTGAGTTCAGCTTGGCAGTGCACTAGCTACTGTAGCTCAGCAATCTCACTACAAGCACAAAGCCTTCATACAGCTTTATTATTGTCAATACACAATATACTGTGTATCACTGGAAAATCACACATTTTGGAAagtaaatttttaaaagttcagATTATATTAGCCATCGAGGCTCAGATTACTAATAGTGGTTGTTTGACTAAATATCCAACATTAAGAATGGCATAaaacatgctgctataggaaaataatcaacaccagggTGGTGTGTTGTAACCCGATGCAAATAACAGCAAACCTATTTTTTtcaataccacagcaatttgccaacaattaagtttttttatttatttaaaaaaaattacagatcaTACTTTTGtctctttatagttacatttaatgttgttacaATAGAAATTCTAGAAACAAAAAAGCTGTTACCTTAGAAGCGATAATgtagagtgcattaatataaacctgtgatttgaatcacAGCCAGTATTTCTGTCAGCGCTGCTAACACATGACCcctgaagtgcattatttttgtataacagcacaatcCAGAGTCtattattccacttataccacagcgatttgccaatgattacaatgtttcatttattcgTGTACAAAACATCAcgcattttaacagtttagtTAGACTTAATGTTATAGAatgtctgagagacaagttagttcctgttctcacttatgttataagttacaataaaaatagttattctctcaccagcctctctttctctctctctcaaaaaccGCAGTCATTTGACCAAGAAACcgtaaagtgtaaactcctctcaGCCGAAGACTTTCTTGTGCTGATAAATTTCACAAAGCACCGTGAGTGCTACAAAGTGCTTATaaccgagactccttccataaatgttaaataaatgtctcctaacaaaaaaatcatcaccACATCAATAGTTAtacgttttactttgttaaactacgcgtctttttatccatttatttttagtcttagattatttgcagcgtccaccatacaagtccctgtgtatgagctgttactatagaaacaataaggtattagaacaaGGGTACTAATATTAACATGACGTTCATGTTACAGTCGGAAGTTCCTGTGCTGTTCTACAAATCATGCAGtgcttctgactaatcagattcgagcattcaacagcactgtgacaTTCCGAAGACCTTTAGACGCTGATCTGAGTTTACAAAAGATTACAAAAGCACAAGTGATTAACACATAAATCCTACACAATATGGCTACATGAACTAATGAATTAAAGAGGAGTAGGAGGTGCATGCTGATGACATCACATAacagtgtgattaaaagaaatcCAGGCTCATGTTCACAATACAATGTCACCAATGCTCTTCTTCAGTTGTTAGTATgtcattcttcattttttttcttttcacttcaccCAAGAGACTTGGATCAGCGCCCAAGTTGAACAAAGCTTCATTTACTGATTGCGTAAATTGTTCGTGTTTTATAGTGTGCAATCTATCGTGGGGCCTTAATTTTGTTTTGCTCTCCggctttgtttttctctctcttatgtCACGGTTTCAGGACGGGGCACGACGGACATATTATTTCTGGAAGAACAAACGTTTTCTTTAATCTGTGCTGCTTTAAACATTGAGTCGGGGGGAGGCAGACTCGAGAATGTGTCTGAAATATTTGTCCAAGtctcaataaaaagaaaatgtcatgttGATAAA
>TU322559
AGGATCAGATGTGACCCCAAACTACGTGGATGCCAACCACGCCaacatcaccatatcaccaTGGTGCAGTTGCCGTGGCAGCGGTAACCAGGAGACAGAGTGTGAAGCTTTTCTGCGTGACTTCAGAGAGAACGCATGTCTAAG
>XM_026942865.2
agagagagagagagaacagaacagaaattaCACTCGGTATTATCCTGCCTGGAAGAACAGTCTTATATTGCAGTATTTATTGCATGAATTCATCAAACTAATTTACACACTAAGCTTTtacttcttattattattattactactattgttattattgttattattgttattattactattattattgtggcTGCTCAGTGAGTACAGATGCGCAGTGATGAGGAAATAGTCTGAATTAGTCTCAGAAGTTGTGACGTGACGTTCTGggaataaaatttttaaaaaaaatggcacaagGAAAAGTTTAACCGGGAAAAGCCGAGCTTTGTGTCCGCATGGACGGGAAAACATCCGCGGATCTTCACGCAAGGATGCCGTGCTGGACTCGGTGATCTCCTCCCGCAGACATCTCCACAACTCTCTCTgcttctgctgcttcttctgcttctgcttcttttAAATCCCAGTCTTTTCCCCTGGATGACAAGTGGAGCTACAGGCATTTGGATGTGAAAGAATTCAATAAAAGGCGATTAGAGATGGAAATgaatcatttcttttaaaaaaaaaaaaaaaaaaaacgggatCACAGCATCTTCAGCCGgatttatcatgattttattaaatattttgacaCTCCTGTTTTTAGCGGATGAGGTGGTTGCTTTGGAGAATGGCGAATGGACGGCCCCCATGGACTGTTTACGGGCGAGCGAGATGTGTAACCAGAACGCGCAGTGCAGCTCACGTTTCCGTATCATGCGCCAGTGCCTGGTGGGCCGAGACCGCAGCGCCATGCTGGAGAATAAGGAGTGCCAGGTGGCGCTAGAGGTCCTGCAGGACAGCCCGCTGCACCACTGCCACTGCAAGAGGGGCATGAAGAAGGAGCTGCAGTGCCTGCAGAGCTACTGGACCATCCACATGAGCCTCAACGAAGgaGAAGAACTTTACGAGACGTCCCCCTATGAGCCAATGCATTTCTCTGATGAATTCCGACTCGCTTCAATTATTTCAGccATGGACTCGGCCTCGTCTAAGGGCACCGTGTGTCCCGAGTCCGTGAATTCATGTAATCCATGTCTGGATGCTGCGAAGGCGTGTAACCTGAATGCAGTGTGTAAGCGTCAGCGCTCGGCCTACGTCACTGCGTGTAGCCGCTCTGCGCCCATCGCGCTCTCGCCCGAGCCGTGCAGCCGTAAACGCTGCCACCGGGCGCTGCGCCAGTTCTTTGAGCGCGTGCAGAACGATCTCAGCTACCCACTGCTCTTCTGCTCGTGCAGGGACAAAGCGTGTGCTGAGCGACGACGCCAGACCATCGTACCCACCTGCTCTTTTGAGGAAAAGGCGAAACCGAACTGCCTCGAGCTCCGGAGGATCTGTCGATCAGATGCACTCTGCAGATCCAGATTGGCAGACTTCCACATGAACTGCCAGACGACTCCGCACTCGATAACGAGCTGTCCTAATGACAACTACCATGGCTGTCTCGTGTCCTACGTTGGGCTTATAGGATCAGATGTGACCCCAAACTACGTGGATGCCAACCACGCCaacatcaccatatcaccaTGGTGCAGTTGCCGTGGCAGCGGTAACCAGGAGACAGAGTGTGAAGCTTTTCTGCGTGACTTCAGAGAGAACGCATGTCTAAgaAACGCAATCCAGGCGTTTGGTTATGGAGCGGACGCTGGTTTCCTTCCATTCACCGACTCTCATTCTGTCGTCCCATCTGAAAAACCCAACCTTCATCCTGCCATTATCACTAAACCCGACATCATCACCAACGACGTCAAACCAGTCGAGAGTGCGTGTGTTTTCTCCACATGCGCTAATCTTAAGGACGGTGCAGAGAAGTGTTCTCCCTCCAGCAGTTTTGAATGTGTAGATGAGAACATTCTAGACTCCGACATGGACAGCTCCATCGACTCTCATCAATCCGAGAACGACAGACACTCATCTGCGTATCTGTCCAGCGTCTCCACTGCAACCATAGTCCTGTCCATCGTACTTGTCATTCAGGAGCACCATTAAGCTGTCGCAGCCTGtcagaataaaaacacatccaTCTGTACGAACAAGTCGTCATTGCACGAGAAGAGAGCAGATACAGGAATCCGGGGGCGTGAGCTGTGAATCGCTTGTATTTCTCAAACCAGATCATCCTTCACTAATATAATTAGACAAAACTGGATTGTGTTTgctaactgatgaaataaaaatcagtgaTTAGTGCTGACTCAGACTTTCGGGCCTGACCGTATGGtgtatgaaaatgtgaaatggaAGTATATTTAATACAGCTTTTCGAAGCTAACATGGAGGCATGTGCTGATGTTACATTTCCATATCAACATAATTTCTATCGTCACAATTTGGGATGCATCAGTACTGAGTACGAGTACAAGTACGCTTTTGGTACTCATCTTTACCAAAATGAGTAAcgtactgagtactgagtactgagtattAACCAATCAGGGGCATCGTGGAACATTTTATGTAGCTCTATTTATGTTGGTGGCTGCAGTCTGTTGCTAGCTCatgaagagttttatttttgcaatgttattgcttttaaacagcatgtttaacaaagaacacGATGATGGCTGTCGTGAGCAACATCAGCGAGTGTGGTCCTTAACGATGATGTGAATTGCACCTTGACTCGAGAGCAAAGTTTAAACTAGCAAAAGAAAGCGCACGTGTCtcggtgctcagtgctcgcagaactgaactgCTCTCATGTGCGATCATTTCTCCGGCTTCACAGCTCCACACtcacaaatatgtgtgtgtgtgtaattcacaACACCTTGTGCTCGTTCTTAATAACCATGCTCACTTGTACTCCTCTGAAAGCCCAGGTCAGCCGTCCTCacgctctctattaaagatactgttgaAAGGGCGTAAGATTTTTTCTCAGGTTACTTgaattgtaggaagatgctgtagttcctcatcttgattttgtttatttgactaTTTGACtgccatcattaatcatgaaatacatcACGAATGCTGTCACTCTGTGTCCTCTGTTCATTAGTGTGGCAACTACACAGCAAAAtccacagtgttgaattaacacccagAGTGTTGAAGTaacagtgtttatatatgtacagttGAACACAAATGAACTCTAAAAGTGTGAAATCAACACTCTGTGTAGGATTTTGCTGTGTAGGCTTACGTCACATGGCATCACATAGTATTAGATTTTAGTatctgggcttttttttttttgaatatgagtaaatgagcacagtatcAGACTGATCCCTAATTTCATTATCAGTATTGCTGCATCCCTAATCACACTATTGTATTACAAAATGATTAATTGCCATTAGAGATGGACATCCAGCATGTGATGCTGCCTTCATATTATACCAGTGTGAACGACGGTTATTGTAGAAGACAGCTGTCTTAATGTGCCTGCCAAATGGGACAGCCTTTATCTCAGGATATTAAGGCTGTCCAAAAATGGTGCCGGGTGTTTGGGGCTATTTTACAGGTTTGGTATAACCATAACAGTATTGTGCATATTAACTATAATAGTATATTGTATgtgattatcagcacatgccaGTCACATGACACAGGCAGCACTGAACCGCTGGAATGAACTATTGATGAACAAGTTGAACAAAGTTGGTACATTTTCAGTTCATAATATGTAGGTCAATGCTTCAGCAGCTGGAGTttgaacagaaatgtaaaagacGATGGGCTGAGGTGAGTTAACATGACTTCTTCATGAAGGATTTCTGAACCAACATCCATTTGTAGTTCCTAGATCAACTTTTCATTTAAgcgattaatttattttactgtcatCAGCGTGCGTCTCTGACTCCTCCCACTCCCGAACATCTTCAAAATTCCCAAATTGGTTAAAATGGAAAACCATCATGTAGCTCTTCATTGCAATTCATTGCAGTTCATGACtttaatacacactaacacagctaAATTTGAAGATGCATCTTTTTACATCCACactaaaacagtgaaaacataGTTTTTGACACTGATGCAAAGTCATGTGACCTCCGCAATTCCAAGATGGCGGATCCCCCGATCGATGCTGTTTTCTATATTAAGTATTCCAATTTCATGTTTGAATACTTTCTGTAGTGTATAAGCACACTGCTATCAATTATATTCTTGATGTCAAACGAAATGTCTTGatgtcaaatattttattttaatataataggtTTTTCACCCTGTGTGCGTACTTAGCAGGCTCTTTTCTATTGTTTCTGCATTTCATTGTGCATGGAACACTTTCAGGAAACGGACTGAATTCCCTAGTGTGGCCAAAAAAATTACCTTTTTCAAATGTGTTAGTATCGACTAGGTCATAGTTATCCAGTTAATCCCAAACCCAGAAGCCAGCTTGAGTTCAGCTTGGCAGTGCACTAGCTACTGTAGCTCAGCAATCTCACTACAAGCACAAAGCCTTCATACAGCTTTATTATTGTCAATACACAATATACTGTGTATCACTGGAAAATCACACATTTTGGAAagtaaatttttaaaagttcagATTATATTAGCCATCGAGGCTCAGATTACTAATAGTGGTTGTTTGACTAAATATCCAACATTAAGAATGGCATAaaacatgctgctataggaaaataatcaacaccagggTGGTGTGTTGTAACCCGATGCAAATAACAGCAAACCTATTTTTTtcaataccacagcaatttgccaacaattaagtttttttatttatttaaaaaaaattacagatcaTACTTTTGtctctttatagttacatttaatgttgttacaATAGAAATTCTAGAAACAAAAAAGCTGTTACCTTAGAAGCGATAATgtagagtgcattaatataaacctgtgatttgaatcacAGCCAGTATTTCTGTCAGCGCTGCTAACACATGACCcctgaagtgcattatttttgtataacagcacaatcCAGAGTCtattattccacttataccacagcgatttgccaatgattacaatgtttcatttattcgTGTACAAAACATCAcgcattttaacagtttagtTAGACTTAATGTTATAGAatgtctgagagacaagttagttcctgttctcacttatgttataagttacaataaaaatagttattctctcaccagcctctctttctctctctctcaaaaaccGCAGTCATTTGACCAAGAAACcgtaaagtgtaaactcctctcaGCCGAAGACTTTCTTGTGCTGATAAATTTCACAAAGCACCGTGAGTGCTACAAAGTGCTTATaaccgagactccttccataaatgttaaataaatgtctcctaacaaaaaaatcatcaccACATCAATAGTTAtacgttttactttgttaaactacgcgtctttttatccatttatttttagtcttagattatttgcagcgtccaccatacaagtccctgtgtatgagctgttactatagaaacaataaggtattagaacaaGGGTACTAATATTAACATGACGTTCATGTTACAGTCGGAAGTTCCTGTGCTGTTCTACAAATCATGCAGtgcttctgactaatcagattcgagcattcaacagcactgtgacaTTCCGAAGACCTTTAGACGCTGATCTGAGTTTACAAAAGATTACAAAAGCACAAGTGATTAACACATAAATCCTACACAATATGGCTACATGAACTAATGAATTAAAGAGGAGTAGGAGGTGCATGCTGATGACATCACATAacagtgtgattaaaagaaatcCAGGCTCATGTTCACAATACAATGTCACCAATGCTCTTCTTCAGTTGTTAGTATgtcattcttcattttttttcttttcacttcaccCAAGAGACTTGGATCAGCGCCCAAGTTGAACAAAGCTTCATTTACTGATTGCGTAAATTGTTCGTGTTTTATAGTGTGCAATCTATCGTGGGGCCTTAATTTTGTTTTGCTCTCCggctttgtttttctctctcttatgtCACGGTTTCAGGACGGGGCACGACGGACATATTATTTCTGGAAGAACAAACGTTTTCTTTAATCTGTGCTGCTTTAAACATTGAGTCGGGGGGAGGCAGACTCGAGAATGTGTCTGAAATATTTGTCCAAGtctcaataaaaagaaaatgtcatgttGATAAAGTGTTA

Function

symbol description
gfra2 Predicted to enable glial cell-derived neurotrophic factor receptor activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within positive regulation of peptidyl-serine phosphorylation of STAT protein and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in plasma membrane. Predicted to be extrinsic component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane.

NR:

description
PREDICTED: GDNF family receptor alpha-2-like isoform X1

GO: NA

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU322558 False 2454 lncRNA 0.36 1 19941046 19943499
TU322559 False 144 lncRNA 0.52 1 19923035 19923178
XM_026942865.2 True 6172 mRNA 0.41 10 19853554 19943505

Neighbor

gene id symbol gene type direction distance location
LOC117595711 NA coding upstream 47759 19792704 ~ 19805795 (+)
LOC113544133 NA coding upstream 53036 19797773 ~ 19800518 (+)
LOC113543930 NA coding upstream 188230 19649463 ~ 19665324 (+)
LOC113544003 NA coding upstream 304360 19540378 ~ 19549194 (+)
LOC117599386 NA coding upstream 313278 19530877 ~ 19540276 (+)
LOC113543999 LOC108277114 coding downstream 74861 20018366 ~ 20023714 (+)
itga1 itga1 coding downstream 107113 20050618 ~ 20110301 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding downstream 174020 20117525 ~ 20123709 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding downstream 182030 20125535 ~ 20154803 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding downstream 239149 20182654 ~ 20214754 (+)
LOC113544143 NA non-coding upstream 28322 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 368650 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 517674 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 624131 19229061 ~ 19229423 (+)
G271576 NA non-coding upstream 841322 19011175 ~ 19012232 (+)
G272246 NA non-coding downstream 22622 19966127 ~ 20008197 (+)
G272249 plpp1 non-coding downstream 279972 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 296389 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 366086 20309591 ~ 20309876 (+)
G272361 NA non-coding downstream 466218 20409723 ~ 20465046 (+)
trnae-cuc_36 NA other upstream 4728 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 23286 19825962 ~ 19830268 (+)
G272180 NA other upstream 28322 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 66723 19782427 ~ 19786831 (+)
LOC113544004 LOC108276941 other upstream 332777 19489206 ~ 19520777 (+)
G272367 LOC108276637 other downstream 454775 20398280 ~ 20398947 (+)
G272374 NA other downstream 479894 20423399 ~ 20429143 (+)
G272408 NA other downstream 596820 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1416014 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1532582 21476087 ~ 21478880 (+)

Expression


Co-expression Network