G316741


Basic Information

Item Value
gene id G316741
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8258829 ~ 8259070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375122
GCCAATCCCTgttaaatgcctgctgaaatctgacaGGCCAGTGCCAGCCCTGACTTTCACCCATATTTAAAGCACTCATTGGCATAAACTACAGATATTTACAGATCCAGGTCTAGGTGCACAGGAGCATCAGTTTATATCTCACAAgtggagctaaaaaaaaaaaaacagacattcagGTCATATAACAATATTTTCTGGTCAACTTATAATCATAATTCTAGCACTACAGTGTGTTCAGg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375122 True 242 lncRNA 0.39 1 8258829 8259070

Neighbor

gene id symbol gene type direction distance location
myo10 myo10,LOC107602648,LOC107749189 coding upstream 1168 8193755 ~ 8257661 (+)
adcy8 adcy8,LOC107569488,LOC107557810,LOC107659784,LOC107663336 coding upstream 128347 8070565 ~ 8130482 (+)
oc90 NA coding upstream 284833 7957043 ~ 7973996 (+)
LOC113543381 hhla1 coding upstream 305493 7941078 ~ 7953336 (+)
kcnq3 kcnq3,LOC107749193 coding upstream 323736 7883895 ~ 7935093 (+)
dip2cb LOC108280427,LOC108428306,LOC107721715,LOC107663347,LOC107659260,LOC107749093 coding downstream 16508 8275578 ~ 8327509 (+)
esyt2a esyt2,LOC106599471 coding downstream 75754 8334824 ~ 8379466 (+)
slco5a1b LOC108280428 coding downstream 127442 8386512 ~ 8422245 (+)
lactb2 lactb2 coding downstream 168749 8427819 ~ 8432247 (+)
slco5a1a LOC108280436,LOC108428320,LOC107721727,LOC107566986,LOC107690218,LOC107602641 coding downstream 178311 8437381 ~ 8462127 (+)
G316630 NA non-coding upstream 214132 8044493 ~ 8044697 (+)
G316419 NA non-coding upstream 529092 7703722 ~ 7729737 (+)
G316405 NA non-coding upstream 568864 7689377 ~ 7689965 (+)
G316398 NA non-coding upstream 586970 7671572 ~ 7671859 (+)
G316397 NA non-coding upstream 587309 7671290 ~ 7671520 (+)
LOC113543009 NA non-coding downstream 188 8259258 ~ 8261712 (+)
G316752 NA non-coding downstream 72436 8331506 ~ 8331786 (+)
G316754 NA non-coding downstream 73354 8332424 ~ 8333531 (+)
G316756 NA non-coding downstream 117715 8376785 ~ 8377093 (+)
G317008 NA non-coding downstream 328925 8587995 ~ 8588211 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 501868 7751694 ~ 7756961 (+)
G316413 NA other upstream 562910 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 660665 7582313 ~ 7598164 (+)
G316001 NA other upstream 1123328 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 1313839 6937340 ~ 6944990 (+)
G316744 NA other downstream 4269 8263339 ~ 8264061 (+)
G316745 NA other downstream 9639 8268709 ~ 8269198 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 552525 8811595 ~ 8813410 (+)
G317390 NA other downstream 1153253 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1699923 9958993 ~ 9977916 (+)

Expression


Co-expression Network