them6 (LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514)


Basic Information

Item Value
gene id them6
gene name LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16931308 ~ 16937488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946365.2
TTATTGAATGTACTGAAGAGTCAGCTGTGTTAGAGTTAGCTAAATCTCTATGCTTAGTAAGCAGAGGCTAATTTTGAATGAGTGACAGTTCAGCTGTGGAGGGAGCAAGAGGCATTTGTGACTGGACCGCAGGCTGTCGAGGCAGTGAGTGCTGGAGAAGTGGGTCTGCGGCAATGGGTGACCTGCTGTTGTGGGTGTTAGCCGTCTTGCTGGTACTCTTCTGCTCCTTGGATGTGTGGTACTACCTTCGCCTGGTGGCCGTTTTACTccgagcctggttcctctctcCGGTGTTTGACATCACAGCAGAGCAGTCTGTCGGAGGCTACGTCCTTCTCCACGATATCGACATGTGTCACATGAACAACGCGCGCTATCTGCGCGAGTGCGACTTCGCCCGCATTTCCCTGTACGCCCGCAACGGTGTGCTGAAGGCCCTGAGGGCCCTGGGGGCCACCATGGTGGTGGGTGCGACTACCATGCGCTACAGACGGCCCCTGTGCGTGGGCGAAAAGTTTGAGCTGCGCACTCGTATCGTCACGTGGGACGGCAAAGCGTTCTATCTTGAGCAGCGCTTCGTGTCTAGAAAAGATGGAATGGTGGCAGCCGTCATGTTCTGCAAACAGAACGTGCTGCGTGGCAGCCCAGACCAAATCCTCCAGCACCTGTGCAAGAGAAAGGTTGAAGCTCCTGAGTTTCCTGAAGAGCTGCAGCACTGGATCAGCTTTATAACGGCAAGCAGCCAGGCTTTAAAGGCCGAGAGTGGACTGGAGAAGAAAAGCGAATGAGGACTGACACGAGACAATAATGTGTACATGTTTACCTGCTAAACATTCTGATAAACACATGGAACATGCATCAGATGTAAACTTGGATGcgattcagtgaatcatttatATGAATCAGTCGAATCGCACAGCTGGAACATCAGTAATGTTTTTGTGCCATTTCACAACTTTGTGTACAAGTTGATTTCAGATTAATGCAGATGTTAATATGtgcattgtacttttttttttttgtgtgtgtgtaaattatttctggattaaaaaaaaatacaacgtTTCAGTGACACTAACATTAGAATCCTATTGGAGAAAACGATAAGAAAAGTTCATTGGTGGGGTTGTTGGTCACGTGACTTGCGGAAACGCGGAAGTATCGCCTTGCTGCTGCCGGTGTTTCGTTAGCGTGAGTACATCAAAAATGCATTTCATGAGGAGTTTTTAAATCACCAGAGATAGCGACAGTCCCTGCGAAATTATTTAGGTGTGAATTTGTTTAATGAgaatcattttggagaaatattTTATCGCTGTGTGGTGAACAGTGTTAGCCTTCATAAAATGCACGAGCTCTAAGACTAGCATGCACTTCATCTTTTTACTGCACAACTGATGAGAATAAgggcttgtttttttaaaaaaaaaaatctcgttATGGCAttaatatatatcaaaatatgtCTTTCCCTTtgtggagaaataaataaataaatagtaaatagtgtgtgttttgtcagaaAATAAGATCCGGACCTCAAGCACTTGGACAAATGAGGGTTCAGTTATAAACTGTTTTCAGTCAAGGTGGCTAGATTGTTGCCTGATAAAAATCATCATTTATTCGCTCAGAAAGAAGGGAAAATAACAGATTTTCtcataggggtgtgtgtgtgatgtgtgatatggCAAAAGATATTAAGATACTTGAATATTTAGGAATGTTTTCAGTgccatattttaaaaacttattttaaataaaggtaccaaactgctTTCCTTGTCCCTGGTTTGGTGCCATCAAGGCTTCAGCTTTCTTATCTGTGCAGGTGCATGTGATGTACCTTGAATTAACTTTTAGTAAAGCTTTAGAGGTACATCAGGCATCCAATTATGTACTTTAGATTACTAAACTGTATTCGTGGTTCCATAGTGAAGATATAAGCTATAAACTGAAGGTACAGAAGGTGTACCCTTCATAGTACCAGCTCAAGTGGCAAGGAAAATGACAATATATTTCCGAGAATCTAGGGGTGAGTGATATATGATATGGAAAAATGTCATATTATACTCTACGATATTCACTATATAAAGTATTAAGGTCGTTTTTATGTGATATTTGAACACCTTTACATTTTTCTcctctacactctcagaaataaagatacCTGCCTCTACTCTTCCTTGTTGCTGCAGTGGTACTATCAAGTATACATCTTTTtaacctttagtgtgtatctttcaTTTGGAAACATGCACATGGTGTACCTTGAATGAGCTTTTAGAGTGAACCTTAAAAGCTACATCAGGAGTCCAATTATGTAGCTCAGATTACTTTTAAGGGCGCACTATGTTCCTATTTCCATGTGAAAGGTACGTATATACTAAAAtatgtacccttgatggtaccgacccagcaacaaggaaaagtacaaaTTGGTACCTTTACTTCTAAGAGCAtcacggggaaaaaaaaaaacaaaaaacagacaaaatcaTAGGGGTGGGTGAGCCCGAAATACATTTCCAACCATTTACaccaagctccgcccccaaaactTATAGTGGTTtaactagagttagcatgctaaccaGAGTTCCCATTAGCAGGGACTGTCATGACATGACTTTCAAATGCACTCGGacattcaactgcttgaaagccaagttacaaCTTTATAAACATGCAATTTCTCCTCATAATAATTTATGAGGATGTGAAGGGGCATTGGGGGTGTGTCtataaaaatgactgacaagaggccagTCCAAATCCAAACAAACATTCTGGACC
>XM_026946366.2
TGAATGTACTGAAGAGTCAGCTGTGTTAGAGTTAGCTAAATCTCTATGCTTAGTAAGCAGAGGCTAATTTTGAATGAGTGACAGTTCAGCTGTGGAGTGTGCTTGTATAGGGAGCAAGAGGCATTTGTGACTGGACCGCAGGCTGTCGAGGCAGTGAGTGCTGGAGAAGTGGGTCTGCGGCAATGGGTGACCTGCTGTTGTGGGTGTTAGCCGTCTTGCTGGTACTCTTCTGCTCCTTGGATGTGTGGTACTACCTTCGCCTGGTGGCCGTTTTACTccgagcctggttcctctctcCGGTGTTTGACATCACAGCAGAGCAGTCTGTCGGAGGCTACGTCCTTCTCCACGATATCGACATGTGTCACATGAACAACGCGCGCTATCTGCGCGAGTGCGACTTCGCCCGCATTTCCCTGTACGCCCGCAACGGTGTGCTGAAGGCCCTGAGGGCCCTGGGGGCCACCATGGTGGTGGGTGCGACTACCATGCGCTACAGACGGCCCCTGTGCGTGGGCGAAAAGTTTGAGCTGCGCACTCGTATCGTCACGTGGGACGGCAAAGCGTTCTATCTTGAGCAGCGCTTCGTGTCTAGAAAAGATGGAATGGTGGCAGCCGTCATGTTCTGCAAACAGAACGTGCTGCGTGGCAGCCCAGACCAAATCCTCCAGCACCTGTGCAAGAGAAAGGTTGAAGCTCCTGAGTTTCCTGAAGAGCTGCAGCACTGGATCAGCTTTATAACGGCAAGCAGCCAGGCTTTAAAGGCCGAGAGTGGACTGGAGAAGAAAAGCGAATGAGGACTGACACGAGACAATAATGTGTACATGTTTACCTGCTAAACATTCTGATAAACACATGGAACATGCATCAGATGTAAACTTGGATGcgattcagtgaatcatttatATGAATCAGTCGAATCGCACAGCTGGAACATCAGTAATGTTTTTGTGCCATTTCACAACTTTGTGTACAAGTTGATTTCAGATTAATGCAGATGTTAATATGtgcattgtacttttttttttttgtgtgtgtgtaaattatttctggattaaaaaaaaatacaacgtTTCAGTGACACTAACATTAGAATCCTATTGGAGAAAACGATAAGAAAAGTTCATTGGTGGGGTTGTTGGTCACGTGACTTGCGGAAACGCGGAAGTATCGCCTTGCTGCTGCCGGTGTTTCGTTAGCGTGAGTACATCAAAAATGCATTTCATGAGGAGTTTTTAAATCACCAGAGATAGCGACAGTCCCTGCGAAATTATTTAGGTGTGAATTTGTTTAATGAgaatcattttggagaaatattTTATCGCTGTGTGGTGAACAGTGTTAGCCTTCATAAAATGCACGAGCTCTAAGACTAGCATGCACTTCATCTTTTTACTGCACAACTGATGAGAATAAgggcttgtttttttaaaaaaaaaaatctcgttATGGCAttaatatatatcaaaatatgtCTTTCCCTTtgtggagaaataaataaataaatagtaaatagtgtgtgttttgtcagaaAATAAGATCCGGACCTCAAGCACTTGGACAAATGAGGGTTCAGTTATAAACTGTTTTCAGTCAAGGTGGCTAGATTGTTGCCTGATAAAAATCATCATTTATTCGCTCAGAAAGAAGGGAAAATAACAGATTTTCtcataggggtgtgtgtgtgatgtgtgatatggCAAAAGATATTAAGATACTTGAATATTTAGGAATGTTTTCAGTgccatattttaaaaacttattttaaataaaggtaccaaactgctTTCCTTGTCCCTGGTTTGGTGCCATCAAGGCTTCAGCTTTCTTATCTGTGCAGGTGCATGTGATGTACCTTGAATTAACTTTTAGTAAAGCTTTAGAGGTACATCAGGCATCCAATTATGTACTTTAGATTACTAAACTGTATTCGTGGTTCCATAGTGAAGATATAAGCTATAAACTGAAGGTACAGAAGGTGTACCCTTCATAGTACCAGCTCAAGTGGCAAGGAAAATGACAATATATTTCCGAGAATCTAGGGGTGAGTGATATATGATATGGAAAAATGTCATATTATACTCTACGATATTCACTATATAAAGTATTAAGGTCGTTTTTATGTGATATTTGAACACCTTTACATTTTTCTcctctacactctcagaaataaagatacCTGCCTCTACTCTTCCTTGTTGCTGCAGTGGTACTATCAAGTATACATCTTTTtaacctttagtgtgtatctttcaTTTGGAAACATGCACATGGTGTACCTTGAATGAGCTTTTAGAGTGAACCTTAAAAGCTACATCAGGAGTCCAATTATGTAGCTCAGATTACTTTTAAGGGCGCACTATGTTCCTATTTCCATGTGAAAGGTACGTATATACTAAAAtatgtacccttgatggtaccgacccagcaacaaggaaaagtacaaaTTGGTACCTTTACTTCTAAGAGCAtcacggggaaaaaaaaaaacaaaaaacagacaaaatcaTAGGGGTGGGTGAGCCCGAAATACATTTCCAACCATTTACaccaagctccgcccccaaaactTATAGTGGTTtaactagagttagcatgctaaccaGAGTTCCCATTAGCAGGGACTGTCATGACATGACTTTCAAATGCACTCGGacattcaactgcttgaaagccaagttacaaCTTTATAAACATGCAATTTCTCCTCATAATAATTTATGAGGATGTGAAGGGGCATTGGGGGTGTGTCtataaaaatgactgacaagaggccagTCCAAATCCAAACAAACATTCTGGACC

Function

NR:

description
protein THEM6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946365.2 False 2796 mRNA 0.42 4 16931308 16937488
XM_026946366.2 True 2805 mRNA 0.42 4 16931312 16937488

Neighbor

gene id symbol gene type direction distance location
LOC113546333 NA coding upstream 48550 16873882 ~ 16882758 (+)
LOC117595734 LOC108261605,LOC108280611 coding upstream 62362 16860823 ~ 16868946 (+)
LOC117599975 LOC108280611,LOC108261605 coding upstream 85663 16830102 ~ 16845645 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding upstream 106700 16820735 ~ 16824608 (+)
LOC117599974 LOC108261605 coding upstream 126045 16798786 ~ 16805263 (+)
ftr67 LOC108280685 coding downstream 4354 16941842 ~ 16947346 (+)
LOC117599965 LOC108280683 coding downstream 15489 16952977 ~ 16956560 (+)
ghrhra LOC108280336,LOC108433063 coding downstream 38435 16975923 ~ 16991112 (+)
xcr1b.1 NA coding downstream 128713 17066201 ~ 17071957 (+)
xcr1b.2 NA coding downstream 138242 17075730 ~ 17081658 (+)
G321602 NA non-coding upstream 38284 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 71730 16792714 ~ 16859578 (+)
G321582 NA non-coding upstream 139211 16750160 ~ 16792097 (+)
G321585 NA non-coding upstream 141701 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 158859 16759842 ~ 16772449 (+)
G321704 LOC108410862 non-coding downstream 21257 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 588083 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 693726 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 784450 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 917060 17854548 ~ 17855258 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 71626 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 137610 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 142340 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 182968 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 798944 16131335 ~ 16132364 (+)
fuz fuz other downstream 541346 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 633161 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 651584 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1288433 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1456535 18394023 ~ 18430022 (+)

Expression


Co-expression Network