G336016


Basic Information

Item Value
gene id G336016
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 213146 ~ 270883 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397903
ttatttgtatagcacttttttacAAAgctcattgtctcaaagcagctttacacaaacaaaagtaaagtgaagtgtgtgtgtgatgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagtacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaagggggggaggtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397903 True 326 lncRNA 0.47 2 213146 270883

Neighbor

gene id symbol gene type direction distance location
LOC113529062 LOC108256868,LOC108256847,LOC108256843,LOC108256846,LOC108262172 coding upstream 7481 204724 ~ 205665 (+)
LOC113529056 LOC108262172 coding upstream 20252 191953 ~ 192894 (+)
LOC113529063 LOC108256844,LOC108256868,LOC108256846,LOC108262172 coding upstream 32389 179816 ~ 180757 (+)
fkbp10a LOC108257211 coding upstream 124631 55108 ~ 88515 (+)
LOC117595853 LOC108256799,LOC108256839 coding downstream 11610 282493 ~ 283422 (+)
LOC113529054 LOC108256799 coding downstream 58731 329614 ~ 330558 (+)
LOC113529052 LOC108256839 coding downstream 64848 335731 ~ 336675 (+)
LOC117595854 LOC108256799 coding downstream 74426 345309 ~ 346253 (+)
LOC117595883 NA coding downstream 81835 352718 ~ 353438 (+)
G335897 LOC107737118 non-coding upstream 68675 127038 ~ 144471 (+)
G335896 NA non-coding upstream 70616 125194 ~ 142530 (+)
G335887 LOC108257212 non-coding upstream 159329 50894 ~ 53817 (+)
G335882 NA non-coding upstream 182998 29943 ~ 30148 (+)
G335876 NA non-coding upstream 192138 14878 ~ 21008 (+)
G336041 NA non-coding downstream 83147 354030 ~ 404443 (+)
G336078 NA non-coding downstream 169556 440439 ~ 440785 (+)
G336111 NA non-coding downstream 322433 593316 ~ 593539 (+)
G336126 NA non-coding downstream 343389 614272 ~ 620153 (+)
G336115 NA non-coding downstream 351849 622732 ~ 626949 (+)
G336034 NA other downstream 15966 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 468486 739369 ~ 749674 (+)
G336172 NA other downstream 523234 794117 ~ 794695 (+)
G336213 NA other downstream 702786 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 862072 1132955 ~ 1136124 (+)

Expression


Co-expression Network