AMCG00000249 (acta1,actc1,LOC103383882,LOC105024319)


Basic Information

Item Value
gene id AMCG00000249
gene name acta1,actc1,LOC103383882,LOC105024319
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8579717 ~ 8585273 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000249
ttttttttttttttttttaatcaggccTGTTCATACTGTCTTTTCTTTCGATCTCCCTTCCAGATCCATCTCTGTCACCATGTGCGACGACGAGGAGACCACTGCTCTGGTGTGTGACAATGGCTCTGGCCTGGTCAAGGCTGGCTTTGCCGGAGATGATGCCCCCCGCGCTGTCTTCCCCTCTATTGTCGGTCGCCCCCGTCACCAGGGTGTCATGGTCGGTATGGGTCAGAAAGATTCCTACGTGGGAGATGAGGCACAGAGCAAGAGGGGTATGGAATCTGCTGGTATTCACGAAACTACCTACAACAGCATCATGAAGTGCGACATTGACATCCGTAAGGATCTGTATGCCAACAACGTCCTGTCCGGCGGCACCACTATGTACCCCGGTATTGCTGACCGCATGCAGAAGGAGATCACCGCCCTGGCCCCCAGCACCATGAAGATCAAGGGGTTTCTGAGGAACAGGGACACAGGACAGACCAGGGCTGTGTCTGCCATAGCTGGCCACAGCAACAACAAGCTAGCCGATATGGTG
>TU187550
CTCCCCTCCCCCTAAAGCCACACCGACACATGTTAGAGTATAAATTGGTGTTTGCTTTCTGCACACTACTCCCTGCTATTTCTCAGGAGCCAGCTGTAGGTGCTGATCTGATCCATCTCTGTCACCATGTGCGACGACGAGGAGACCACTGCTCTGGTGTGTGACAATGGCTCTGGCCTGGTCAAGGCTGGCTTTGCCGGAGATGATGCCCCCCGCGCTGTCTTCCCCTCTATTGTCGGTCGCCCCCGTCACCAGGGTGTCATGGTCGGTATGGGTCAGAAAGATTCCTACGTGGGAGATGAGGCACAGAGCAAGAGGGGTATCCTCACCCTGAAATACCCCATTGAGCATGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACNNN

Function

symbol description
acta1 Predicted to enable ADP binding activity; ATP binding activity; and myosin binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in skeletal muscle thin filament assembly. Located in actin filament; stress fiber; and striated muscle thin filament. Implicated in congenital fiber-type disproportion and nemaline myopathy 3.
actc1 Enables ATP binding activity; microfilament motor activity; and myosin binding activity. Involved in actin-myosin filament sliding and heart contraction. Located in actin filament and sarcomere. Implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11.

NR:

description
PREDICTED: actin, alpha cardiac isoform X1

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000249 True 541 mRNA 0.53 4 8580526 8585273
TU187550 False 408 TUCP 0.55 3 8579717 8581112

Neighbor

gene id symbol gene type direction distance location
AMCG00000244 NA coding upstream 10047 8567467 ~ 8569670 (+)
AMCG00000246 NA coding upstream 28858 8527438 ~ 8550859 (+)
AMCG00000250 NA coding upstream 54493 8519864 ~ 8525224 (+)
AMCG00000245 NA coding upstream 96020 8473574 ~ 8483697 (+)
AMCG00000248 NA coding upstream 122429 8442303 ~ 8457288 (+)
AMCG00000252 gjd2,gjd2b coding downstream 631 8585904 ~ 8587355 (+)
AMCG00000256 NA coding downstream 317634 8902907 ~ 8906396 (+)
AMCG00000255 samd4a coding downstream 339124 8924397 ~ 8945589 (+)
AMCG00000258 gnpnat1 coding downstream 411859 8997132 ~ 9004514 (+)
AMCG00000259 NA coding downstream 433389 9018662 ~ 9024727 (+)
G149001 NA non-coding upstream 623328 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 820120 7759369 ~ 7759597 (+)
G148919 NA non-coding upstream 895620 7683878 ~ 7684097 (+)
G148791 NA non-coding upstream 1487257 7092025 ~ 7092460 (+)
G148768 NA non-coding upstream 1644557 6933300 ~ 6935160 (+)
G149059 NA non-coding downstream 83707 8668980 ~ 8673786 (+)
G149172 psmc6 non-coding downstream 428098 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 694790 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 1134674 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 1372440 9957713 ~ 9962571 (+)
AMCG00000251 NA other upstream 4593 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1217010 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1255266 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1282752 7290666 ~ 7296965 (+)
AMCG00000198 LOC106586563 other upstream 2058854 6500893 ~ 6520863 (+)
AMCG00000285 map4k5 other downstream 854788 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 929549 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 976284 9561557 ~ 9591088 (+)
G149424 NA other downstream 1384051 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1949317 10534590 ~ 10535137 (+)

Expression


Co-expression Network