G149055


Basic Information

Item Value
gene id G149055
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8583648 ~ 8584007 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187552
CTGAACCCTTCTGTATTGTACTGCACACAGGTCTGAGCCTCACTTCACTTCACCTAGCTGCttcagcacatacacacacatgaccCCTGACATGACACATGGCCATATCCGTCTGtggtatttaaatgaaaaatgtcaggGCTGTTATGGACCTCCGGGGAAATTAAGTATCCTTATAAATGCGCAAATCACCTTTTAATGACTGCTTCCTTTTAGTATATAACCTTTGAATGCATTGTGATtcagaaaaaatgcattaagtaCAAACACACTGCTCATCTTGTACAATTGTATAggctttaaaagcaaaacagcacCGACATATAACTAACGACATTTATATAAcgcattgtttattat

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU187552 True 360 lncRNA 0.38 1 8583648 8584007

Neighbor

gene id symbol gene type direction distance location
AMCG00000244 NA coding upstream 13978 8567467 ~ 8569670 (+)
AMCG00000246 NA coding upstream 32789 8527438 ~ 8550859 (+)
AMCG00000250 NA coding upstream 58424 8519864 ~ 8525224 (+)
AMCG00000245 NA coding upstream 99951 8473574 ~ 8483697 (+)
AMCG00000248 NA coding upstream 126360 8442303 ~ 8457288 (+)
AMCG00000252 gjd2,gjd2b coding downstream 1897 8585904 ~ 8587355 (+)
AMCG00000256 NA coding downstream 318900 8902907 ~ 8906396 (+)
AMCG00000255 samd4a coding downstream 340390 8924397 ~ 8945589 (+)
AMCG00000258 gnpnat1 coding downstream 413125 8997132 ~ 9004514 (+)
AMCG00000259 NA coding downstream 434655 9018662 ~ 9024727 (+)
G149001 NA non-coding upstream 627259 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 824051 7759369 ~ 7759597 (+)
G148919 NA non-coding upstream 899551 7683878 ~ 7684097 (+)
G148791 NA non-coding upstream 1491188 7092025 ~ 7092460 (+)
G148768 NA non-coding upstream 1648488 6933300 ~ 6935160 (+)
G149056 NA non-coding downstream 481 8584488 ~ 8584967 (+)
G149059 NA non-coding downstream 84973 8668980 ~ 8673786 (+)
G149172 psmc6 non-coding downstream 429364 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 696056 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 1135940 9719947 ~ 9776988 (+)
AMCG00000251 NA other upstream 8524 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1220941 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1259197 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1286683 7290666 ~ 7296965 (+)
AMCG00000198 LOC106586563 other upstream 2062785 6500893 ~ 6520863 (+)
AMCG00000285 map4k5 other downstream 856054 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 930815 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 977550 9561557 ~ 9591088 (+)
G149424 NA other downstream 1385317 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1950583 10534590 ~ 10535137 (+)

Expression


Co-expression Network