G149059


Basic Information

Item Value
gene id G149059
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8668980 ~ 8673786 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187556
ACAgataaaagaaaagacaaagacaacatCACACAATTACAATGTTTAATGAGGACCTAAAAATTGCAACAAGAGCCCCACTTGtctcacagaacagcacagactAATTGTACAGCACACACTAGTGTGCACATCTCCAGCAAATCATCACAACAGAAACACACCAGCAGTATTACAATTttggcattatatatatatatatcgatataCTTGATGAGGGTGAAGTCTAAATGCAGCCCACAGTTCATGGTTTGTTTCTTGTTCTGtatctttctttcttacagaaatacaatataaagaaTAAACTAACTAGTTGAacttgacattttacaaatacattcttTCATATGAAACATTAACCTGCATTACTGTGGATATCCTTGTATAATACCTAAGAAGTGGAATAATTATGATCTGCTCCGTCCCATTATGATTGCCTAGGATTAGGTCCTTTCGTTTCACCCAGTTCATGGCTAGCTTTAtctactttattaaaataaaagaagtaATGTGAAGCTGGCACTGGTCTCAGAGCAGTGATGCCCCTGCAGCCGTCACAGTGGCATTGAGACCCCTAGACTGTCTGTGACTGAAGGTCTAGGTTGGATTCTGGCCATGGTAATAACTCTCAAAGCATGTTTATCAAATGTAGGATGACTGTTTACATTTCTGATATGCAGTTACGAATTTGGCtgaatgtatattatatagaaCCCATTTAATACATAACAGATCTGCAGAATAATCTGAGACtaaaggctgggattaaatcaaaactttgacccaatccggccctaaatcATATGagcagtgaaataaattaataaaaaacaacgAAAAATATTCTGATCCGAGAAAAAAAAGCACCTTGAAGGCTTGCCTAAGGTTTCCATCTAGTGTTGAAAATTGGGAACCGCACTCTCTTTACAAGCCTTTCcacaaaatataaagcaaattaaacaggGGTCGACGTGCGCATACTGTAGACGCGTGCTGTGCACAATTTGTAGCATTGTTCTGGattgcattgttattttaaacaaaaaatgtttaaaaaaaacagtggtcCCATCACATTTTTTGGATTTACATAAAGAGTGAATAAGATTAGCCTTAACCCTAACACCAAAAGCTTAGTCTCTGAGCTGAATACATGAAATATTAGTCATGCtttgttaaaaagtaaaaaaaaacagtagtatTTCACCAGCTTCTTCTCTCACTTGAGTGCCAACACTTTCATTACAACTTAATTGCAGAAGTTAtactatattaataatacacatcTTTATGAATAAGTACAGAAATTGTATTTAGCACAGGAGGATGCTCTCATTTGGTACATGTTGGTTTAGTgatagactttcatctttcagGAAGCAATGATACCCTGGGTCCCCATGCATGTTATGTTAggacatacatttaaatttataagCTGGGGTAACAAATGTtgagtgtatttttaaagtattaaaaggCACCGATTTAGAATCATTGCACTTTTCGAGATGAAAATAAAGGTGTTTGATATGGGTTTTGGTTATATATGCTTGAGGGCATATTTACCACTTCACTATGACCTACACCTAATCCAAATTTAGACCTACCCACGAAGCTCAAATTACAAACCCGTACCCCAtcgtgtttttgtttatttagtagtagaaagtggcttcttacgataaattaaaaatattacttaCAGTCACACAGTATAGGCAACATACTGTAGCTGATGACCAGTATTGAGGTCTGGTCTGCAGAATAAGGCATCCATCTCcactgctgtgtgtgctgcacttagtaacataaaataacaggagaaattaaaagtacaatCACAGAACCTCCAGGAGGCGGTCTTATAGGAAAAATGTAAACCGAGTTGCTCCCTCTATTAGCCCTGAATGCTCAGAACAGGATTTGATTGGTCATTCCCCCTCAGTAAATATGTAACAAGTGTATTTTCACTTCACTGGAGTCTCTTTACAGAGTAGGCAGAGACTCCAAAGACATAGTTCATActtgaaaaacattcaaataaaacaaacacaagatttattttttttacaaaaagaaaaatagaaaagcaaattGGGTTTGATCTTTTATGCATGATGCTGAAGCCTACCATTATTACCCACCATAGGACTAAAAACAAGTGTGCACTGGGCACAATCACAATCTCGATTaccacattattaaaatatatcagctaATATATATGCACAAAAGAAATGTCCACACTggaatgtttaaaatgctgGGAGAAACAATTTCCCTCAAAGTGGCTGTTTGCACTGACTGTGCTCACATTTTATTGGGGACTGTATCTCTGTAGGTCTGTTTATGAGCAGAGACATATATTTGTATCCAGGTGTTAAAGATAGCATTTGTATTCCTGATGCTTAGATATtaatagaaaaactaaattctAAATTGTTACATTTGAAGAGCACACATCAGTCACAAAGACTTAATTGAAGAAGAATAAAGACAACAGGTTAAGTTAAAGTCTTGTAGAGCAGGAACTCACAAAACAGCTCCTGCCTGGTTAAAATCTCACTTTGATGGGGAAACCTAAACATACTGTACAACAGTTGTACAAAGGATATCAATTTCAATAGTTTTCCTGCagtacattataatacaattactcctataatgtattatattctgtttaaatagagttaatctaaatatacatattgtttgtttctaagGATTATAACACCTGTGGGGACAAGGCAGGGAAAACTGCTTATTGTTTCAGTAGAAGACAATACTGTTTATGACCAAGTATATTTTCCAGAAAGTTtccttatttttacttttactactTCTGCTGAAACAATAACAGAATCCAGGACAATACAGAGAAAGATATTTTCTCATATTAAATACGATTTGCTTTCGATTATCCCCTTCCAAATTACCATAGtcaaacaatatacatttggtTCAAATACACCGACATCAGATATATACCTTTGCTACATTTTGATGGTACTTTCTCCCACTGCCACCACAACTAAAACTGtgaaaagtaacaaaacaacTGCCTCTTAACTTCACAATGGAAATATAGTAAGTTGTATATTAGATGTGAAAAAAGTGTGGTACTGAAGAATGCAATGAAATTGGCACTTAAAAGATCTATGGATAAAACATACATCCCAGTCTGATCTCAAGATCACTGGCATGCCGTACAGCAGAAAATTATCCAAGCTTAAGGACAGCATAGCATTTTGAATTCCCAATAGCTAAAAtagctttgtttgtttacttcctgcagacaagaaatacaaacaaggcAAATCAAAAATGCCTAGAAGTGATCGACACCAAGGCAGAGGTGAATTAACCCATATAGagctttttaatttccttctaaCTATAtaagtacatttgtttattacattttattaaaagtggAAAATACTGAAAGTACAAGTGTATATCCAATGCTAAATTAACTCATGCtttagcaatatatatatttaagtttttctaaaataacatttagtaaaaattataataaaaagcgAATGTAGTAGTAAACCACTCTCTGTTGACTTTCTATCAAGACCCTAGAaccattttgtaaatgttaaacTTCATTTTACGGAGCGAAATCATTTTACtaactaaaaataaagtcaaGGAAATCAAGCAATAGGGCCTAGAAAACCGTGAAATTCAGGAGGGGTGCTTGGTAGATGTTTTCATTGGAAATTggaaatcaaaaataatgttaaatgtatttcgATGTATGAATTCACAATTTgtgtaatgaaatatatatgaataaaatacatgttttttattgttgtcaAATTATTCCTTCAAGAGCCCTCAATCAAAGAAAAGTCTGCTTCATTGAAACGAGGCTTCTGGGTAATGTTTATGCTTACATCCACACATCAGCCAGATAAGCCCTTACACATCTAtgaccctctctctcactctttcgtTCATGCGCGCTTTCCTCCTTCAAAGGAACAGGACTGCTACCAAGTCAGTTAGTGGTCAATTAACATGCTTCATTTGATATGCATCTGCAAgaggtttttaattttaacagcCAAATTATTATCCTGGCCAACTTACCACAATCACCTTCTTTCTTCATGAAGACTATTAAAGAACAACTTCAAAAACAAACCCCTACTTGTGTATTGTATTCCTGTTTTACATAGTGTTGGGTCCATTCTTCTTTTGTGGATGGTACACTGGTAAATACACATGAACCACATTTGTATTATGTGACGCACAAAGTCAGGTGACATGGGGGTGTTTTCCCTTCCCCAGATTgggcaaaagaaaaagcaaatgtcCGATTCCTTTCACTGCCATTTGGATGAAACTGAGGGACCGGTCTTCCATTGTGGGAGGTTGATGTGGCATGACTTCCTGGCCAATGGAGGAGAGGGAACTGACCGAACTTCAGAGTTGTACCTCCAACTCATTCACTCTTCTTTCACCTGGTTAggatctattttttttcttatttttttttctttttttttaagaaacactgAATGTCcaacaatgcaaattaaagatcaagaaaaaaaaggataaaatcAAAAGCACGTCCCAAAAGGCCTGTGCATTTCACCCCTTGGTAGATCCCCAAAAATTTGGCAACGGTTCAACATTTGTGCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187556 True 4673 lncRNA 0.35 2 8668980 8673786

Neighbor

gene id symbol gene type direction distance location
AMCG00000252 gjd2,gjd2b coding upstream 81625 8585904 ~ 8587355 (+)
AMCG00000244 NA coding upstream 99310 8567467 ~ 8569670 (+)
AMCG00000246 NA coding upstream 118121 8527438 ~ 8550859 (+)
AMCG00000250 NA coding upstream 143756 8519864 ~ 8525224 (+)
AMCG00000245 NA coding upstream 185283 8473574 ~ 8483697 (+)
AMCG00000256 NA coding downstream 229121 8902907 ~ 8906396 (+)
AMCG00000255 samd4a coding downstream 250611 8924397 ~ 8945589 (+)
AMCG00000258 gnpnat1 coding downstream 323346 8997132 ~ 9004514 (+)
AMCG00000259 NA coding downstream 344876 9018662 ~ 9024727 (+)
AMCG00000266 NA coding downstream 361839 9035625 ~ 9079959 (+)
G149056 NA non-coding upstream 84013 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 84973 8583648 ~ 8584007 (+)
G149001 NA non-coding upstream 712591 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 909383 7759369 ~ 7759597 (+)
G148919 NA non-coding upstream 984883 7683878 ~ 7684097 (+)
G149172 psmc6 non-coding downstream 339585 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 606277 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 1046161 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 1283927 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 1299262 9973048 ~ 9975172 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 83707 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 93856 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1306273 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1344529 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1372015 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 766275 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 841036 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 887771 9561557 ~ 9591088 (+)
G149424 NA other downstream 1295538 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1860804 10534590 ~ 10535137 (+)

Expression


Co-expression Network