G139999 (c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567)


Basic Information

Item Value
gene id G139999
gene name c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8958739 ~ 8960425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176094
ACCTGTATCTCTGGTAGTCATCCTCGTCCTTATCCAGGCTGACAAGTTCATTGGGACAGGCTTCATTACCCAACAGGCTAAGATACTCCAGTGAAGGTGTCACTTCAGCCAAGTGATCCAGCAGGGATTCTATATCGGATATTTGGTTCTTATTGAGTGTTAGGGTATGGAGGTGAGGTAACCTGGGCAACCGCAGGTCATTTCCGAGGAGATTGTTGTCCACAATCAGCTCTTCCAGCTCGCTGAATGCTTTCAGCCCCTCCAGTGACCTGC

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176094 True 273 lncRNA 0.49 2 8958739 8960425

Neighbor

gene id symbol gene type direction distance location
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 140775 8794807 ~ 8817964 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 188663 8739738 ~ 8770076 (+)
AMCG00002990 NA coding upstream 316301 8641915 ~ 8642438 (+)
AMCG00002989 dlg5 coding upstream 323462 8584494 ~ 8635277 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding upstream 394123 8553579 ~ 8564616 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding downstream 193539 9153964 ~ 9156135 (+)
AMCG00002995 NA coding downstream 308492 9268917 ~ 9273158 (+)
AMCG00002997 NA coding downstream 356306 9316731 ~ 9325141 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding downstream 533626 9494051 ~ 9508297 (+)
AMCG00003008 NA coding downstream 601855 9562280 ~ 9575635 (+)
G139998 NA non-coding upstream 25770 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 38009 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 107053 8850179 ~ 8851686 (+)
G139919 zcchc24,LOC106608383,LOC107564348 non-coding upstream 415456 8542727 ~ 8543283 (+)
G139918 LOC105903367,LOC108245402 non-coding upstream 422365 8536080 ~ 8536374 (+)
G140002 NA non-coding downstream 185876 9146301 ~ 9146572 (+)
G140156 NA non-coding downstream 770223 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 806661 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 821509 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 827322 9787747 ~ 9788069 (+)
AMCG00002982 NA other upstream 461774 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 914326 8037577 ~ 8044413 (+)
G139784 NA other upstream 1031907 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 1037831 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1579252 7376687 ~ 7379487 (+)
AMCG00002996 NA other downstream 276315 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 339886 9300311 ~ 9316633 (+)
G140030 NA other downstream 365063 9325488 ~ 9330464 (+)
G140189 NA other downstream 817825 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 884351 9844776 ~ 9853453 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_06060886_06073483 NA coding CI01180000 null 6059381 ~ 6074222 (+)