AMCG00003614


Basic Information

Item Value
gene id AMCG00003614
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11725083 ~ 11729991 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003614
ATGTATCCTCCGTCGCCCCCGTCTTGCAACTTCCAGATCATGCTGGGGGAGTCGCTCAGCCACCACATCAACATCGAGAACAACAAGCCCTCCAGCGGCCACCATGTCGGGGCTAACCTGAACAAAAGGCAGGCTTTGCTGAagaaaggagggaggagagtgCGCTCCAGTGCGGTGAGCTTGCAGAGCCGCCTGcaccaccagcagcagcagcagcagcagcaggctcTGCTCCGGAGCAACCCGGCCCGCTGCACggacatcaacaacaacagcaccGCGGCGGGGGCCGGCGCGAAGAAAGCCTCCGCTGCCCCGACAGAGCCCGTCTGCGGCCGGGCGCAAGCCACTGCAATAGCACTGCACCATCACCTCAGACAGGGGGCCAGGAAGGAGGCACTGAAGTCCAAAACATCTAGAGCTGACAGAGCCCCTTTTCCCTGCAGTCAGTCTGTGCTCAGCCTGAGCAAATGTGACTTTCCAGGCCAGAACCTGAACGCCGTTGGTCAGAAGAACAAGCACAGCTCACCGAGCGAGGCCTCTGCAGCCAAGAGGAATGAGAACACCATCCGGCACAAGTCCCCCCTACTGGAGTTTTACCGCCAGGAAGGCAAAAAGCCTCTGAACTCCACagataattttaaaattgtcaAAGTCACTACAGTTGAACCCATTCTTGAAGAAAATCTTAAAGATGGTGAGAAGAACTACGCTGGTCCAAAATTTACTGAGCCTCCTTCGCCCAGCGTCCTGCCCAAGCCCCCGAGCCACTGGGTGGGAGAGAACAGCCCACGACATTCCGACCACAGCCGGGCGCTCATGACCGTCCACCTGAAGTCTCTGCTGAAGGTCCAGGCAATGCCATGA
>TU2400
GGGGCGGTTCTGCTCCTCCTTCAGCCCGTTTGTTGGAGAGAGGGAGCGCTGGGATGAGAAGCGAGCTCCGAGTGGGAAGATcgtgtaatattttaaatagGCACTGAAGTCCAAAACATCTAGAGCTGACAGAGCCCCTTTTCCCTGCAGTCAGTCTGTGCTCAGCCTGAGCAAATGTGACTTTCCAGGCCAGAACCTGAACGCCGTTGGTCAGAAGAACAAGCACAGCTCACCGAGCGAGGCCTCTGCAGCCAAGAGGAATGAGAACACCATCCGGCACAAGTCCCCCCTACTGGAGTTTTACCGCCAGGAAGGCAAAAAGCCTCTGAACTCCACagataattttaaaattgtcaAAGTCACTACAGTTGAACCCATTCTTGAAGAAAATCTTAAAGATGGTGAGAAGAACTACGCTGGTCCAAAATTTACTGAGCCTCCTTCGCCCAGCGTCCTGCCCAAGCCCCCGAGCCACTGGGTGGGAGAGAACAGCCCACGACATTCCGACCACAGCCGGGCGCTCATGACCGTCCACCTGAAGTCTCTGCTGAAGGTCCAGGCAATGCCATGAATTCAGATTCAGAAAccttgaggaaaataaataaatcgtaATTTGGCACTGAAGAGCACTGGAATCAGAAGTTGTTGCAACAGCAGGTCCTGTGTTTTggactgtattgtattttacacttGTGCAGAACAGCGGCCTTGTACAGTTTAGCAGATTTTTAATGAacttgtgtaaatgtaaatattgtaaaccatgtaatatttgtgtatatttttcatgttattttaacaaaagtaaaatatagttttgttaCTGAAACCTAAACGTATTATGCACCGCAAGTTGGTGCACTttctaaattgttttattttgtctatgAAAATGGTGTACaaaaatgggaagaaaaaaaaagactacaaTGCCCATTTGGGTACATTTGAAAGTAAGAAACAATTTTGATATTCTTACAAATTTGCACAAGACTGAGAACCTAACAGGTGCAGAGGCAACTAGTCTgtagcaaaaaaacaaaccaaccaacctGTGGTTTCTTTAAAAAGAGTCAACTTAAGTGGCTGCTTGTCACTCAATGCACTGCAGAGGAAACAAATTCATGTGGCACAATCTTTGTGAAGCCCAGgagtggaaataaaaatgtgaacatttaatccataattgtgACCTCACATGAAGACAGCTACCTGCTCGAACTGTTCCTTTACTTGCAATTACCAGCACTGACCTAATgctaagaaaaatacatttcttttaccTGCCATTTCCCCCCCCGACACATGGATGTGGAGATCCCAGtaaaatgcaattgaagatgCCCAAAGAAGGAAGATGACTGTGATTGTCTTGCTTTATGTAAGGACACATTTGAAAGTTATGAGAAGATAATATGACCCCAAATAGTTAGGCAGCTATTTTGAATTCTTGGATCTCAGAAGACGCACAAATGGAAAATACCATTCAGTACCAAAAATCTTGATAATTTGTTGCAACACCTTTTGTAAACGTCTGTTTCAGcttcactaaaaaaaaaaaaaaaaaaaaaaagcatcactGCTTATTTCCCcacataattacaataattggctagaaataattataatttatatatatattacaaaaaaaagttataaaataaaatttattTGGCCTCCCCCAATATggtcttttgtatttttgtttgtttttggatcaTTACTGTTCTAATTTGTAAATGAAGTAAGGCAAGAGCAAATGTTAtatacacgtacacacacacacatcagcccatatcaatccactgctggatgaaagcctccccaagatgtttctactTGCTTTGAACTATTGCTTCCCTTTCCCAtttcatgcctgcaaagtttactATTTCATCCTCCCATCTTTTATGGGTTTGtcttatagtttttttttttttttttttttcatctcgtGGGAAAAATTcagtagcttcctttgtccacctttggtctgttcttcttgcagtgtgtccgacCCAttcccattttaacattttcacacaatGGTGTGACATTTTTGTTCTAGGATCCATTCGTTACCATCTCtatatatctgcaaattattagTGTATgtagagcatttattttttcgtATATAGAAATACTTCATACAGATAATTATTACATTGTACGGGGATCTTCATTCTATGGATGTGTGGAAGCTGTAGTTGGCCTTTATGAAATGCATCGCTAACCATCccaatttaagaagtgaaattgtaagactttttttctttaaacattctTGCACTGGGTAGTTAAGTAGAAGAAGTGGATGGAGTCTGAAAAGCTgagtatttgtttatataacttTGGACACTGAAGCCgctttatactttttattaaaataactataaagaATGTCCATTGTCTTTAACCAGCCTTGCAGGATTCAGCTAAGCTAAGCCCACACAGGCCCAGTGGGGTTCATGTCTCTTAACATCTGGCGATTGAATTAGTCATTTCACTGCACTATTTTTTCGAATAGCATCAAACGAATAGACTCCCCCTTGTGGCAACACCTGTGAATGTTGTGGATTGCCCTAAAAATGCTGACCACTTGTTTTAGGATGGCAGTCATAAGCAACAGAAATCCTGTAGTGCGTCCATTGTTACCTTGTATATAAacaatcatatttgtttttgatgggGTTCATGAACAAAATAGCACAATATTTCTCAACTTGCTGGGACCAAG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003614 False 867 mRNA 0.58 2 11725775 11727786
TU2400 True 2740 lncRNA 0.39 3 11725083 11729991

Neighbor

gene id symbol gene type direction distance location
AMCG00003609 NA coding upstream 165938 11542567 ~ 11559145 (+)
AMCG00003605 slc35a1,LOC106607707 coding upstream 198009 11519506 ~ 11527074 (+)
AMCG00003608 NA coding upstream 209604 11510405 ~ 11515479 (+)
AMCG00003607 NA coding upstream 216777 11493952 ~ 11508306 (+)
AMCG00003603 NA coding upstream 265020 11449320 ~ 11460063 (+)
AMCG00003615 NA coding downstream 2564 11732555 ~ 11742638 (+)
AMCG00003621 NA coding downstream 94794 11824785 ~ 11828430 (+)
AMCG00003620 NA coding downstream 109746 11839737 ~ 11840496 (+)
AMCG00003622 NA coding downstream 121836 11851827 ~ 11856733 (+)
AMCG00003624 NA coding downstream 276445 12006436 ~ 12024934 (+)
G1987 NA non-coding upstream 154673 11570052 ~ 11570410 (+)
G1902 NA non-coding upstream 322054 11331039 ~ 11403029 (+)
G1891 NA non-coding upstream 496808 11227959 ~ 11228275 (+)
G1855 NA non-coding upstream 674439 11050151 ~ 11050644 (+)
G1747 ralgapa2 non-coding upstream 1267318 10431664 ~ 10457765 (+)
G2018 NA non-coding downstream 83131 11813122 ~ 11831420 (+)
G2027 NA non-coding downstream 175992 11905983 ~ 11906188 (+)
G2042 NA non-coding downstream 296135 12026126 ~ 12028193 (+)
G2086 NA non-coding downstream 357546 12087537 ~ 12088986 (+)
G2125 NA non-coding downstream 490331 12220322 ~ 12259643 (+)
G1989 cnr1,LOC104936193 other upstream 147754 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 233486 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 242152 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 1943327 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 2461615 9255828 ~ 9263468 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 1172575 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 1295578 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 1425069 13155060 ~ 13206839 (+)
G2440 NA other downstream 2688525 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 3121761 14851752 ~ 14866758 (+)

Expression


Co-expression Network