AMCG00009245


Basic Information

Item Value
gene id AMCG00009245
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30407870 ~ 30421424 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009245
GGgatgtcagtgctgtgtgcgGTGCGTGAGTGAGGCGAGCGCAGACGGGAAGGGTAGTTTCTGTCACTACTCGGGAATTGTGAAAGTGGTTTCATCTGGACAGCCCAGGACGAGATCAGGCCCGGCCGAGATCGAGAGCCAGAGATCGGCACAGCGCTAAGCGAGCGGAATGGCAGCTCCCCGGCCCATTAAAGGCATTTTGAAGAACAAAACCAGCGGGGCCAGCGTCAGGACAGGCCCAGAAGTGCCGGCGCTTGAGAGCCCTGAGACAGCGACTCCCGCAGCCCTCGACGATGACCAGCAAAAGAAGTCACAAAAATGGGATGAAATGAACATCTTGGCTACCTACCACCCTGCAGATAAAGACTATGGATTAATAAAAATTGATGAGCCCAGTACGCCGTATAACAGAATGATCGGCGATGAGGATGACGAAGGATCTTTGAGTGATTCGGAATCTAACACAGCTCTCCCTGCAGATGCGCTGGCTATGAAGCTGGCCGAAGCAGAAGGAGCTGAACCCAAGATTTTCCACAGGGAGGAAGAAGAGAGCAgtgatgaagaggaggaggaggagttgaCTCCTGAAGAGCAAGaaaaaaagaagcagtttaaaatgatgaggaaaatgcattataatgaaGGGTTGAATATTAAGCTTGCCAGACAGCTCATAGCCAGTGAGCTagaggaagaagaggatgaAGACGAGGAGATGAAGGATGATACAGAGACGGAAGACATCAGTGTAGACCCCCCTGAAAATGCTGGTTCACAGGATTCCTAGAAGAGGAGAACAACGTGTCTGACTTCTCGAGTAAATCTTAAGACACCGGTAGTTGCTTCAGAGCTGCTCAAAGATGACACTGCTTCACGATCCCGCCATTCTCCGCACGTCTCTATTTATGAACACTGTAAACGAAGCATATCGACCAAAGGGTTGTTTCTTCAGTTGCCaagattattgttgttgtcgttattCACTATTATTAATCGAACAAACTAGTGTTCTTGGAGAAAGGTCCCGGACCTCCTGTTGCTGTACGGTTGATTCTAATGCCTGTGGGCTCTGACTTACGGAAGACCACTTCATCTTCAGTACAGAATGGCATTTCGGTTTTCTGTTCTTTGGTGTGTGCCCCCCCCGCTGCTGCTTCCTCTCAGTTACACACTCAACAACCAGAAGCACAGTGTGTGGCTTTGGAAGAGAGGCATTGCTACGTTTtcctctcctttttctttttcaatgagTCCTGTTGTAAGGAAATCAATGTTATTCAAACCCATTTTAATGTAAGCACATTGTATGGACTGACGTTGAAAGCTATAGCACtgatttcctgttttttgtctgccttttaaaataatactaattgaGCTTAAGATGGAATGTCAAAAAGCTACTACTGTACAGTGTTAGCAGAAGGGTTGATATGGGCCTCGAGTTTGTTTTAATGGCCCTGACGTACGTTTGCCTGATTGGTATTAAATGTAGGCAGCATAAGAGATTTACTCGCTTTAATCTTATGAACTACTGATAAGTGTGACTATCTTGTGGGGCATTGaaatttcaacttttttttttttttattgaggatgtttattttggggatatttttttatttttggcctTGAGGCTGTTGTACTTTGGAAACCGTCAGTTACTCAGTTGTGCTGAGATGCGTTACTGCagctattttaaaaaacaacatgatcttcttgggggtgggggggaccagcattatctgaaaatggaaaaataatatatattgaaattgaaCATATTTGGGAGTGAATCAATACCCATTAGTCTTAACAATACATATTGAATtacctttaatttgtcatgacATCCTTACAATGAGTTGggtaattgaatgatattaagCAAGTTGTAATGTGACTAcaatcattttttcttttttttcttttaatacacattattttatttttttgtatgtgattGCATGTATGAATTTGGCTGgtacatgtgtttttgtatttaattaaacatttgtcttGTATTCcatttgcatatatttgtatactgaGGGCACATATGGGATTCAATCAAGCTATAGGAACAGGAAGATGGGAAACCAGTGTAGCTTTGCGTCTACGTTTTGGTCCCTACAGATTGAGGTATCTTACTTTTTTGCTGGCTGGATTCCTGACTGCAGACTTGTTTAGCTTGATTGCATCACGTATGATTGTATAATTTTCCTTGAAATGTACTGACTTGTGACAGTGAACGGATATCCTGTGGTTCATATTTTGTTGatcatgtgtgttttattattttgtcatctcTGTTGCAGCATGACATTTTATTCCAGAAAGGAAAATTGCCCATGTGTAAAGAATACTCCACCTCTTCAGTGTCCggttttattgtactttttccCCAAAAACGTTTGGGGAAACGTTTGCCTCTTAAAATGGGACtgtgcgttttattttattttattttgtaacttcaCAAATGGCATGTTCTTAAAAATTAAggatatgtgtgtttttttcttgtctccataaataaatgaagacataATAATGATA

Function

GO: NA

KEGG:

id description
K16833 PPP1R2, IPP2; protein phosphatase inhibitor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009245 True 2559 mRNA 0.41 6 30407870 30421424

Neighbor

gene id symbol gene type direction distance location
AMCG00009249 NA coding upstream 3630 30388953 ~ 30404240 (+)
AMCG00009248 dis3l2 coding upstream 34202 30363052 ~ 30373668 (+)
AMCG00009246 dis3l2 coding upstream 80342 30312794 ~ 30327528 (+)
AMCG00009250 NA coding upstream 109742 30265253 ~ 30298128 (+)
AMCG00009239 NA coding upstream 184393 30218869 ~ 30223477 (+)
AMCG00009247 NA coding downstream 25252 30446676 ~ 30483381 (+)
AMCG00009251 NA coding downstream 95802 30517226 ~ 30530492 (+)
AMCG00009252 NA coding downstream 131132 30552556 ~ 30558292 (+)
AMCG00009257 NA coding downstream 195470 30616894 ~ 30642141 (+)
AMCG00009256 NA coding downstream 220782 30642206 ~ 30774490 (+)
G55649 NA non-coding upstream 165139 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 185743 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 409384 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 412000 29995563 ~ 29995870 (+)
G55595 lsg1 non-coding upstream 413229 29993622 ~ 29994641 (+)
G55707 NA non-coding downstream 74119 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 178050 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 525942 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 734094 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 1121197 31542621 ~ 31547232 (+)
G55591 NA other upstream 412432 29995126 ~ 29995438 (+)
G55573 NA other upstream 496306 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1233139 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1299643 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1396102 28928892 ~ 29011768 (+)
G56060 NA other downstream 1740336 32161760 ~ 32165365 (+)
G56368 NA other downstream 3579372 34000796 ~ 34031445 (+)
G56369 NA other downstream 3594246 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3941995 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4967490 35388914 ~ 35389327 (+)

Expression


Co-expression Network