AMCG00009249


Basic Information

Item Value
gene id AMCG00009249
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30388953 ~ 30404240 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009249
ATGGAGCAAAGCTGGACTCTGAGACTGATTTCAACTCTTCTCCTGTTCATCCCTCACTCCATAGGTGTGCCTTCAGAGCAGGAGCAGGACCCTGCCTACTGGAACGCCCAGGCCAGGATGTCTCTTCAGGCTGCGCTAAAGCTGCAACCTCGGCACCATCGCGCCAAGAACCTCGTGCTCTTCCTGGGAGATGGAATGGGAGTGAGCACGGTGTCAGCCACGCGCATCCTGAGGGGCCAGATGGAGGGGAACCCTGGTGAGGAGACAGTCGCGAGCACGGGCACGGCCTACCACTGCGGAGTGAAGGCCAATTCCAAGACAGTGGGCCTGAGTGCCTCCGCGGTGGCCTCCCAGTGCAACAGCACCACAGGGAACGAGGTGTTCTCTGTGCTGCACCGCGCCAAGGCACAGGGGAAGTCAGTGGGCATTGTGACCACCACCCGGGTCCAGCACGCCTCCCCTGCAGCCTCCTATGCCCACTGTGTGAGCCGCAGCTGGTACAGCGATGCAGACCTACCCCCCAGCGCTAGAAGAGAGGGATGCAAAGACATTGCCACACAGCTCATTTACAACACAGACATTAATGTCATCCTAGGTGGGGGGCGCATGTACATGACTCCGAAGGGGACACCCGACCCAGAATACCCCACATCAACTTCCCGCCGCGGCCAGCGCAAGGACAGACAGAACCTCATTAAGCTGTGGCTGGAGGCCCGAGAGtCCAAGAATGCAAAATATGTATGGCATAAAGAACAGTTTGATGCTGTGGATGTTGAGTCAACCAACTATCTTATggGTCTCTTTGAGGCCAAGGATATGAGGTATGAGCTGGATCGCAACACCACTCGAGATCCCTCCATCGTGGAGATGACTGAGAAGGCCATTCAGATCCTCAGCAAGAACCCCAAAGGATTTTTCCTCTTTGTGGAAGATAAGGGGAGAATTGACCATGGGCACCATGACGGTGTTGCCAAACTAGCACTGACAGAGGCGGTGATGTTTGACCGGGCAATCCAGCGCGCCTCCGAACTGACCAGCGACTCCGACACTCTGACTGTGGTCACCGCTGACCACTCCCATGTCTTCACCTTGGGAGGAAATACCCCACGAGGGAACCCAATCTTTGGTCTCGCCCCAAAGATTGCTGATGACGACATGCCATATACCAGTATCCTGTACGCGAATGGACCTGGATATCTGCTCCAGAATGGAACGAGagcaaatattacatttgttgaTTACATGGACGACGAGTATATGCAGCAGGCTGCCGTGCCCTTGAACACAGAGACTCATGGTGGGGAAGATGTGGCTATCTACGCCAGAGGCCCCATGGCCCATCTGTTCCATGGTGTGAAGGAGCAGAATTACATAGCCCACGTCTTGGCCTACGCAGCCTGTCTGGAGCCCTACACAGACTGCCCTCCAGAGGCCGGCGCAGCCCCTCACTGTCACGCCAGCTTGTCCTGCTCAATAATCCCTGaggaggaggaagacccgAACTTTTGGATCGTGAAAGCAAAGGAGTCTCTGAAGGAAGCTCTGGAGCTGCAGCCCAATGTGCACCGTGCCAAGAATATCATCCTCTTCTTGGGCGATGGAATGGGTGTTTCCACGGTGACAGCAGCCCGGATCCTAAAAGGACAGGAGAAGGGAAGGACAGGCGAGGAGAGCGTCTTGAACACGGACACCTTCCCTTACTTGGCTCTGTCCAAGACTTACAATGTAGACCGCCAGATGCCTGACAGCGCCGGCACAGGCACTGCCTACTTGTGTGGCGTCAAGGCCAATTATGGCACCATCGGCCTGAGTGCGGCAGCCAGGCGCTACCAGTGCAACACCACTGCCGGCAATGAGGTCACCTCCATCCTCCACCGGGCCAAGCAAGTCGGTAAATCAGTGGGCATCGTGACCACAACCCGGGTCCAGCATGCCTCTCCAGCTGCTACCTACGCCCATACCGCCAGCAGAGATTGGTACAGTGACGTTAACCTGCCCAGTGACGCAAAGGCCCAAGGCTGTCAGGACATCGCCCTCCAGCTCATCAGCAACACAGACATTGATGTTATTCTGGGAGGAGGAAGGCAATACATGATGCCCAACACAACCCGTGATCCTGAGTACCAAACCAGATATGGAAACAGACAGGATGGGAGAAACCTCATTGACGAGTGGCTGAAAAAGAGGAAGAATGCACATTATGTCTGGAACAAAGATCAACTTGATAAAGTGAACGTGAAGAAGGCAGACTACCTAATGGGTCTCTTTGAGCCACAAGACACCAGGTACGAGCTGGACCGTAATCCCAAGACTGACCCCTCCCTCACTGAGATGACAGAAAAGGCCATCAAAATTCTCAGCAAGAACCCCAAAGGATTTTTCCTCTTTGCCAAGTATGCCCTGACTGAAACACTGGAATTCGACAAGGCGATTGAGAGGACAGGGGAGCTGACCAGTACGCTGGACACTCTGACAGTGGCCACTGCTGACCACTCTCACGTCTTCACTCTGGGAGGGAAGGCGCATCGGGGAGACTCTGTCTTTGAACTTTCACCTGAAATTGCTGATGACAAGAAACGTTTCACAACCATCTTATACGGAAATGGACCAGGTTTTATACTTCAAAATGGAACCCGTCCTGCTCCCAACGCCACTACTAAAGAGTACATGCAGCAGTCTGCTGTGTTGCTCGATTCGGAGACTCATGGCTCAGAAGATGTGGCCATTTTTGCCAAGGGCCCGATGGCCCACCTGTTCCACGGAGTGCAGGAGCAAAGTTACATCCCTCACGTCATGGCCTATGCTGCTTGCATCGAGCCCTACACTGACTGTATCCTGGATGCTCCAGACTGGGCCAGCGCTCCTCAGGCCAGCCCCCTGACTCTCACCCTTGCCCTGGGTATCCTTCCCATGGTGTCTGCCCTCTTCACTGCCTGAAACAAGACATGCTACTCCCTGTAGGTTTCCCAAGTTTGTGCTGTGTTATTATTGCATTAAGGAAACAGTAATATCTGCCATTTATATCctgtaatattgaaaagaaagatgcttaaagataaatatttgttcccaaaacgtatatatatatatatttaaattactcttATAAACATACCaccttaaaactgaaatatgaacaataatcttttgtttttccccaataaaaactgtatattATTGTGACTGCTTAATTGAAGTtgatgttataaatatatacagactaAAGGATAAACCaatataaagtgtctcagtaaggtgttggggcaccacgagccaccagaacagcttcaatgctct

Function

GO: NA

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009249 True 3297 mRNA 0.52 22 30388953 30404240

Neighbor

gene id symbol gene type direction distance location
AMCG00009248 dis3l2 coding upstream 15285 30363052 ~ 30373668 (+)
AMCG00009246 dis3l2 coding upstream 61425 30312794 ~ 30327528 (+)
AMCG00009250 NA coding upstream 90825 30265253 ~ 30298128 (+)
AMCG00009239 NA coding upstream 165476 30218869 ~ 30223477 (+)
AMCG00009238 NA coding upstream 180224 30186900 ~ 30208729 (+)
AMCG00009245 NA coding downstream 3630 30407870 ~ 30421424 (+)
AMCG00009247 NA coding downstream 42436 30446676 ~ 30483381 (+)
AMCG00009251 NA coding downstream 112986 30517226 ~ 30530492 (+)
AMCG00009252 NA coding downstream 148316 30552556 ~ 30558292 (+)
AMCG00009257 NA coding downstream 212654 30616894 ~ 30642141 (+)
G55649 NA non-coding upstream 146222 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 166826 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 390467 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 393083 29995563 ~ 29995870 (+)
G55595 lsg1 non-coding upstream 394312 29993622 ~ 29994641 (+)
G55707 NA non-coding downstream 91303 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 195234 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 543126 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 751278 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 1138381 31542621 ~ 31547232 (+)
G55591 NA other upstream 393515 29995126 ~ 29995438 (+)
G55573 NA other upstream 477389 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1214222 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1280726 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1377185 28928892 ~ 29011768 (+)
G56060 NA other downstream 1757520 32161760 ~ 32165365 (+)
G56368 NA other downstream 3596556 34000796 ~ 34031445 (+)
G56369 NA other downstream 3611430 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3959179 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4984674 35388914 ~ 35389327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G44555 NA non-coding NC_035901.1 CM008304.1 23457069 ~ 23457737 (+)