AMCG00009248 (dis3l2)


Basic Information

Item Value
gene id AMCG00009248
gene name dis3l2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30363052 ~ 30373668 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009248
GCTTGTGGAGGAGTTCATGCTGCTGGCCAACATGGCCACCGCTCACCAGATCTACCGTGCCTTCCCAGAGCAGGCCCTGCTGCGCCGCCACCCCCCACCTCAGACCAAGATGGTGGACGACCTTCTGGAGTTCTGTGACCAAATGGGACTGAAGCTGGACTTTTCCTCTGCCGGCACGTTGAACAGGAGCTTGAATGAAACTCTGGGTACTGACCAATACTCCACTGCTAGGAAAGAGGTCCTCACAAACATGTGCTCTCGGCCAATGCAGATGGCGGTGTATTTCTGCACTGGAGTTCTGCAAGAGGAGCCCCTGTTCCGACACTATGCCCTGAATGTGCCATTTTACACCCACTTCACTTCCCCCATCAGGCGCTACGCTGACATCATTGTGCACCGGCTGCTGGCTGCTTCTCTAGGCTGTGGCTCTCGCTTGCGTCTGACCGAGGACGATGTTCAGAAACAGGCTTCACATTGCAACGACAAGAAGATGGCCTCCAAACGCGTTCAGGAGCTGAGTTCAGATCTCTTCTTCGCTGCCTTTGTGAAGGAGTCTGGGCCTCTGGAGTCTGAGGCAATGGTGATGGGCGTTCTTGACCGTGCGTTCGATGTGCTTGTGTTGAGATATGGAGTACAGAAACGCATCTACTGCAATGCTCTGGAAGGACTCCAGGACTTCCAGTACCGCAAGGTGGGCAAGAAGCCAGAGCTGACGCTGGTCTGGGGACCGGAGTGCCCAGGGGAATCTCCATGTCAACAGGAGATATCCATTTTCACTTTGGTGGAGGTGGTCCTGAAGTCCGATGGAGCTCCAATGAAGTACAGCGCAGTGATAAAGCGACCCCCACAGGCCACTTCA

Function

symbol description
dis3l2 Predicted to enable 3'-5'-exoribonuclease activity. Acts upstream of or within pronephros development. Predicted to be located in cytoplasm. Predicted to be part of exosome (RNase complex). Predicted to be active in P-body. Is expressed in pronephros. Human ortholog(s) of this gene implicated in Perlman syndrome and nephroblastoma. Orthologous to human DIS3L2 (DIS3 like 3'-5' exoribonuclease 2).

NR:

description
PREDICTED: DIS3-like exonuclease 2

GO: NA

KEGG:

id description
K18758 DIS3L2; DIS3-like exonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009248 True 859 mRNA 0.55 7 30363052 30373668

Neighbor

gene id symbol gene type direction distance location
AMCG00009246 dis3l2 coding upstream 35524 30312794 ~ 30327528 (+)
AMCG00009250 NA coding upstream 64924 30265253 ~ 30298128 (+)
AMCG00009239 NA coding upstream 139575 30218869 ~ 30223477 (+)
AMCG00009238 NA coding upstream 154323 30186900 ~ 30208729 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding upstream 353210 30008802 ~ 30009842 (+)
AMCG00009249 NA coding downstream 15285 30388953 ~ 30404240 (+)
AMCG00009245 NA coding downstream 34202 30407870 ~ 30421424 (+)
AMCG00009247 NA coding downstream 73008 30446676 ~ 30483381 (+)
AMCG00009251 NA coding downstream 143558 30517226 ~ 30530492 (+)
AMCG00009252 NA coding downstream 178888 30552556 ~ 30558292 (+)
G55649 NA non-coding upstream 120321 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 140925 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 364566 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 367182 29995563 ~ 29995870 (+)
G55595 lsg1 non-coding upstream 368411 29993622 ~ 29994641 (+)
G55707 NA non-coding downstream 121875 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 225806 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 573698 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 781850 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 1168953 31542621 ~ 31547232 (+)
G55591 NA other upstream 367614 29995126 ~ 29995438 (+)
G55573 NA other upstream 451488 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1188321 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1254825 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1351284 28928892 ~ 29011768 (+)
G56060 NA other downstream 1788092 32161760 ~ 32165365 (+)
G56368 NA other downstream 3627128 34000796 ~ 34031445 (+)
G56369 NA other downstream 3642002 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3989751 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 5015246 35388914 ~ 35389327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location