AMCG00009252


Basic Information

Item Value
gene id AMCG00009252
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30552556 ~ 30558292 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009252
ATGTGGAAGGAAGAAGTGAGGAGAAGTAACACAATGAGTGATATTCCCATCAGTTCGCTGACTTTAATCTGTGTGGGATCCAGCTTCGCCTTCTCTGGGCTGTTTTATCATTTATGCAAACAAAAGAGACAAGAAATCCAAAAGCTTAAGGAAATACCGAAGTTTCAGCCTAATGAAGAGTTATTAAAGATTCTTAAAGCATCACCCCACAAACGTCTCCAGTATGTTGCAATTGAAGGACAAATTGAGCCAGATGGTGAGCCGCTATTCAGCCAGTATGTCCCAAGATGCTTTGGGGTGATTCAGAGAGTCATCGTTCAGGAGCACTGGAAAGTGTGGAACTCCATCACAAAGACATGGGCGCACACCAAGAAGAACAACAAGCAGTCAACGAACACAGTACCGTTCAGCCTGGTGTCCTTCGGCAGTGGGGTGTCGGTGAAGGTGCAGTCTCCGCTGGAGGCCTCGGGCCTTTATCTGGAGCAAGTTTACCGGCGCCTGCGTACAGCCAAGGAGGGATTCATGGGCTTTGTGGCTCAGGAAATAACCCAGGAGAAGCCAAAAGTCCTAGAGGAATGTGAGGAGCTGCTGCGAGTGGGGGCCACATTGACAGGGTTTGGAGAGCTGGTCCTTGAGCGAGGCCGTGTCCTGAAGCTGCTTCCCCCTCGGGATGGCCGGGAGTACATCCTCGTGGCCACTGACTACAAGAGCTTCCTGCAGCGGCACGAGGATTCGGTGACAATGTGGAAACTGCTGACCGCTGTTTTTGGGATTGCAGGAACTGCTCTCCTGGCTTGGGCTATTTACAAAGCATACTGTAGACAGAATGTAAAGCGGGATAAGTAGGTATCCATTGATGTTATGATAAATggcagtaaaaatacaaaaaagtacatGGTATTAACATTAATTGTGGGTCCTTTGATGACTGATTTTAGTGAAATAGTTTGGACCACTGCTCTTACACGCTGCATAACCACTGCTGtatttggaaaataatgcaTTCTGAGTTCTTTAGACAGGCTGTTGAAAAGAATGGATGAATACACGTTAATAGAGctcagtatttttttctctttgtaacTATCAGCACATAGAGACCAGACAGCAGAAAATAATGTGTGGGCCTATAATATGCCCCTTATATGATTTGCTCTTTAATGGCATGCTGTGATCTGCAATTTCAACACACCCTGAATTAAAACATTCcttcactttcatttatttaagacATGTTCTGTTTTAATTCAGTGCCTTGCCACTGCTCTCTCACcggaaacaaaataatcaagttcaagatacattattaaaaatagtcAGAATTACCCAACATGTTCTCCTTACTCTATTAGGAAAAGCAAATATGAAGCACATATTGCACTTAATATCTGTGATGCTTTGATGTACTGAATACATTGTACCCTAAACATGTTCCCTAGTTAAACAATAACTACATGTAAATTTAACTGACCAAATACTGTTGTAAGGAAGAACAGAGCTATTGTTTCAAACCAATATTTATTCAGCTTTCAACATTTAAAGCTTGTGCTGCtacacagtgcagtgtttaGTGAAAAGACTGAGAGCTGAATCCTTTGTGTGTACCATGGAGATTTGAAgcatcagtttgtttttgtctcatCAAAAGCATCTTGCTTGTTTGTCTTCAAATACAGTCCATTGGCAAGTGATACAACGGAAGATATTTCCCATGTATGACAGAAATaagtctttttatttaattattgaattacCCATTATTATACTACCCTTAATTGTTGCTTTTGAAATACCTGTAATGTTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009987 cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009252 True 1804 mRNA 0.42 5 30552556 30558292

Neighbor

gene id symbol gene type direction distance location
AMCG00009251 NA coding upstream 22064 30517226 ~ 30530492 (+)
AMCG00009247 NA coding upstream 69175 30446676 ~ 30483381 (+)
AMCG00009245 NA coding upstream 131132 30407870 ~ 30421424 (+)
AMCG00009249 NA coding upstream 148316 30388953 ~ 30404240 (+)
AMCG00009248 dis3l2 coding upstream 178888 30363052 ~ 30373668 (+)
AMCG00009257 NA coding downstream 58602 30616894 ~ 30642141 (+)
AMCG00009256 NA coding downstream 83914 30642206 ~ 30774490 (+)
AMCG00009264 NA coding downstream 280601 30838893 ~ 30846488 (+)
AMCG00009260 NA coding downstream 307199 30865491 ~ 30877032 (+)
AMCG00009259 LOC103373082 coding downstream 369882 30928174 ~ 30935918 (+)
G55707 NA non-coding upstream 54952 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 309825 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 330429 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 554070 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 556686 29995563 ~ 29995870 (+)
G55745 NA non-coding downstream 41182 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 389074 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 597226 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 984329 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 990239 31548531 ~ 31552162 (+)
G55591 NA other upstream 557118 29995126 ~ 29995438 (+)
G55573 NA other upstream 640992 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1377825 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1444329 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1540788 28928892 ~ 29011768 (+)
G56060 NA other downstream 1603468 32161760 ~ 32165365 (+)
G56368 NA other downstream 3442504 34000796 ~ 34031445 (+)
G56369 NA other downstream 3457378 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3805127 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4830622 35388914 ~ 35389327 (+)

Expression


Co-expression Network