RNA id: AMCG00009252


Basic Information

Item Value
RNA id AMCG00009252
length 1804
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00009252
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30552556 ~ 30558292 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAAGGAAGAAGTGAGGAGAAGTAACACAATGAGTGATATTCCCATCAGTTCGCTGACTTTAATCTGTGTGGGATCCAGCTTCGCCTTCTCTGGGCTGTTTTATCATTTATGCAAACAAAAGAGACAAGAAATCCAAAAGCTTAAGGAAATACCGAAGTTTCAGCCTAATGAAGAGTTATTAAAGATTCTTAAAGCATCACCCCACAAACGTCTCCAGTATGTTGCAATTGAAGGACAAATTGAGCCAGATGGTGAGCCGCTATTCAGCCAGTATGTCCCAAGATGCTTTGGGGTGATTCAGAGAGTCATCGTTCAGGAGCACTGGAAAGTGTGGAACTCCATCACAAAGACATGGGCGCACACCAAGAAGAACAACAAGCAGTCAACGAACACAGTACCGTTCAGCCTGGTGTCCTTCGGCAGTGGGGTGTCGGTGAAGGTGCAGTCTCCGCTGGAGGCCTCGGGCCTTTATCTGGAGCAAGTTTACCGGCGCCTGCGTACAGCCAAGGAGGGATTCATGGGCTTTGTGGCTCAGGAAATAACCCAGGAGAAGCCAAAAGTCCTAGAGGAATGTGAGGAGCTGCTGCGAGTGGGGGCCACATTGACAGGGTTTGGAGAGCTGGTCCTTGAGCGAGGCCGTGTCCTGAAGCTGCTTCCCCCTCGGGATGGCCGGGAGTACATCCTCGTGGCCACTGACTACAAGAGCTTCCTGCAGCGGCACGAGGATTCGGTGACAATGTGGAAACTGCTGACCGCTGTTTTTGGGATTGCAGGAACTGCTCTCCTGGCTTGGGCTATTTACAAAGCATACTGTAGACAGAATGTAAAGCGGGATAAGTAGGTATCCATTGATGTTATGATAAATggcagtaaaaatacaaaaaagtacatGGTATTAACATTAATTGTGGGTCCTTTGATGACTGATTTTAGTGAAATAGTTTGGACCACTGCTCTTACACGCTGCATAACCACTGCTGtatttggaaaataatgcaTTCTGAGTTCTTTAGACAGGCTGTTGAAAAGAATGGATGAATACACGTTAATAGAGctcagtatttttttctctttgtaacTATCAGCACATAGAGACCAGACAGCAGAAAATAATGTGTGGGCCTATAATATGCCCCTTATATGATTTGCTCTTTAATGGCATGCTGTGATCTGCAATTTCAACACACCCTGAATTAAAACATTCcttcactttcatttatttaagacATGTTCTGTTTTAATTCAGTGCCTTGCCACTGCTCTCTCACcggaaacaaaataatcaagttcaagatacattattaaaaatagtcAGAATTACCCAACATGTTCTCCTTACTCTATTAGGAAAAGCAAATATGAAGCACATATTGCACTTAATATCTGTGATGCTTTGATGTACTGAATACATTGTACCCTAAACATGTTCCCTAGTTAAACAATAACTACATGTAAATTTAACTGACCAAATACTGTTGTAAGGAAGAACAGAGCTATTGTTTCAAACCAATATTTATTCAGCTTTCAACATTTAAAGCTTGTGCTGCtacacagtgcagtgtttaGTGAAAAGACTGAGAGCTGAATCCTTTGTGTGTACCATGGAGATTTGAAgcatcagtttgtttttgtctcatCAAAAGCATCTTGCTTGTTTGTCTTCAAATACAGTCCATTGGCAAGTGATACAACGGAAGATATTTCCCATGTATGACAGAAATaagtctttttatttaattattgaattacCCATTATTATACTACCCTTAATTGTTGCTTTTGAAATACCTGTAATGTTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009987 cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69639 lncRNA upstream 54952 30495543 ~ 30497604 (+) True G55707
TU69569 lncRNA upstream 309825 30239333 ~ 30242731 (+) False G55649
TU69565 lncRNA upstream 312064 30236924 ~ 30240492 (+) True G55649
TU69568 lncRNA upstream 312064 30236924 ~ 30240492 (+) False G55649
TU69522 lncRNA upstream 330429 30142212 ~ 30222127 (+) True G55620
TU69678 lncRNA downstream 41182 30599474 ~ 30600234 (+) False G55745
TU69680 lncRNA downstream 41640 30599932 ~ 30602032 (+) True G55745
TU69754 lncRNA downstream 389074 30947366 ~ 30950209 (+) True G55800
TU69761 lncRNA downstream 597226 31155518 ~ 31163151 (+) True G55807
TU69914 lncRNA downstream 984329 31542621 ~ 31547232 (+) True G55926
AMCG00009251 mRNA upstream 22064 30517226 ~ 30530492 (+) True AMCG00009251
AMCG00009247 mRNA upstream 69175 30446676 ~ 30483381 (+) True AMCG00009247
AMCG00009245 mRNA upstream 131132 30407870 ~ 30421424 (+) True AMCG00009245
AMCG00009249 mRNA upstream 148316 30388953 ~ 30404240 (+) True AMCG00009249
AMCG00009248 mRNA upstream 178888 30363052 ~ 30373668 (+) True AMCG00009248
AMCG00009257 mRNA downstream 58602 30616894 ~ 30642141 (+) True AMCG00009257
AMCG00009256 mRNA downstream 83914 30642206 ~ 30774490 (+) True AMCG00009256
AMCG00009264 mRNA downstream 280601 30838893 ~ 30846488 (+) True AMCG00009264
AMCG00009260 mRNA downstream 307199 30865491 ~ 30877032 (+) True AMCG00009260
AMCG00009259 mRNA downstream 369882 30928174 ~ 30935918 (+) True AMCG00009259
TU69474 other upstream 557118 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 640992 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1377856 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1445648 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1603468 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3442504 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3457378 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 4830622 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 6801809 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile