AMCG00013764


Basic Information

Item Value
gene id AMCG00013764
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41818045 ~ 41833392 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013764
CATCTCCAGGAGTTTGTATGAAGTTTGTGTGTAGACGTTTTGCTGTCGAAAAGAAAAATCAAGGACTTATTCCCAATACATCTTTGTCTGAGACCACATCGAAACGTTTCGGACTGCCCTGCACAGTAGctaagtataaatatatatatatacattgtaaagATGACAGCCAGGCATAGAAAGGGGAAAATCAATCACAAACAGGAAGATAACTCTTTCAAACATGACGCCTTTGAACCGGAGTCGCGAAGTGGAAACCATTACACCTTGCtgtctattttatttctcttgatcTTGGCCGGAGGTGGTACTGTCGCCTGGTTTTTGCAACAGCAGCATCAGACCATAGCTTCCCTGGCAGACAGGGTTATGGGGATGCAAGTGAAAATGGTGCAGCTCCAGACCTCCCAGGATGAAGTCCAAGAGGCTCATGAAAAGCTTTACAGCTCCAAGGGGTATGACCAGAGAATCTCAAAGCTAGAAGAGGCTCATGCACTGGCGCAGCAGCAGGTGCAAAAGGCAGTGGCCAGTTTTGAGCTACTGAAGGAGCCTGACCTAATTGCCAAAGTGTCCTTACTTCAAACTCAGATGAAGACCACAACTGCCGAATTAAACAACCTTCTGGCGAGTCAGACCAAAGACCTGGAGTCCATAAAAGAGCAGGTTGCTTCGATCACGAGTACGGACTCCAACCTGGGACGTAGCCTGAGATCCCTGTCTGATTCTGTCGCAGAGTACCGTGGGAAAGTGGAATCTCTCCAGGAGTCAACTGCGGGCCAAGGTGAGCAGCTGGAGAAAGTCCGTGAAGCAAACGCCAGGCTGCTGCAAAGTCTACAGGGGGTGACGAGCAGCGCATCGAATGTAGAAAACCACTTGGACCAACATGCCAAACTGCTGGATGCTTTGTCATCCAAAGTGGAAGAGCAGACCAAGGATGTGCTGGGCCTTCGGGAGTCTGCAGCCACATGCAAGGTGCAGCTGGACACAAACGGGCAGGAATTATCTGGGGTCAGAGAACTGCTGCAGGATGTCCAAGCACAGAGGGCATCTCAGGGAGAGGAACTTCGCTCTATACATAATAGCCTTGCTGAGCAGAGCAGAGACGTACAGAACATTAACACAGCGCTCAGGACCAAGCTAGAGGCTGTGCAAGAGCAGATCAACAAGCTGCAGGGTGCAGGGCAGGGGGGGCAGCCGGACGCCTCGGTGCTGGGGGAGCTCCAGAGGGTCACACAGGGGCTGGAACAACTGAACGTCAGAGTGAGCACCACTGTACAGAGCTGTGTTTCTGGGGAGGTGGAGGCCAGCTGTGAGGAGTGCTCCTGGCCCCTGGAGCAGGCCGTCCAGTTCCCAGCACACACCGCCCACCCACCGGTCATCTCTCTGGGCCTCACGCAGTCCAGCCCTGGTGTGCGGGTCAGAGTAGCTGAGCCCACTCAGTCAGGCTTCAAGGTGAGCCGGAGTGAGCGCTATCCCAGTGAGCCGCTCCCAGCACTGCAGTCTCTCCGCAGCTCCTGCCTACCTACTTGCCCCCGACCTTCAGCTGCAGAAATGCAAGCCTGCATTCCCAGGTCCTACCTAACGCCAGTGCGAGACGAGGAAGCTGAGTCGCAGAGAAAAGCCAGATCTCGACAAGCGCGTCAAACACGGCGGTCAACACAGGGTGTGACTCTAGCGGACCTGAAGGAAGCACAGAGGACGTTTGGACTGTCTCGATCAGAAAGACAGGTCACAGTAatggatggacagacagaaCAAGACAATCTGGAAAAAAGGGATGTGAATGACAGATGGGAAGCAAAGTCAAAGGACCTGGGAGATATCATTCCGAGGTGgaccagggagagagaggagttTGGCTACCGAAGGTCCAGACTGGGATCTCAGGCTGAGAGTCCCACCACGCCCCTCACATCGCCCTCTGCAACTGGCTGCTTTTACTTTCCCCCCTCCAACCTGACCAATCGGCTGCCCTCCAGGGGGCTGGGCAAGGAACTGGACAGGAATGGAAATGAATGGAGAAACGAGGTGGACCGAGACTCTGATGACATTTCCAACTTCATCGTGTCTCTCCAAGAGAGACGCCAAGCTAGAGACCGCAGCCGAGGGGGTGGAGGCTCTCTCTCGATGCGTCAGGAAGATGCTGACGGAGGGACAGAGGTGGCAGACGTGGTG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013764 True 2175 mRNA 0.54 11 41818045 41833392

Neighbor

gene id symbol gene type direction distance location
AMCG00013763 NA coding downstream 15746 41788900 ~ 41802299 (-)
AMCG00013752 NA coding downstream 209780 41606981 ~ 41608265 (-)
AMCG00013751 NA coding downstream 281559 41513604 ~ 41536486 (-)
AMCG00013750 NA coding downstream 457567 41297560 ~ 41360478 (-)
AMCG00013749 NA coding downstream 538568 41236306 ~ 41279477 (-)
AMCG00013762 NA coding upstream 1164 41834556 ~ 41863407 (-)
AMCG00013769 LOC106572428,LOC106964720 coding upstream 274559 42107951 ~ 42109350 (-)
AMCG00013766 grm4,LOC102228039,LOC106903978,LOC103464721,LOC108231655 coding upstream 290653 42124045 ~ 42128534 (-)
AMCG00013765 LOC106567287,LOC106572369 coding upstream 337935 42171327 ~ 42177706 (-)
AMCG00013768 LOC106572369,LOC106566015,LOC103467650 coding upstream 400063 42233455 ~ 42237433 (-)
G46630 NA non-coding downstream 29506 41781442 ~ 41788539 (-)
G46565 NA non-coding downstream 340384 41467022 ~ 41477661 (-)
G46555 NA non-coding downstream 375880 41441934 ~ 41442165 (-)
G46547 NA non-coding downstream 391917 41422771 ~ 41426128 (-)
G46491 NA non-coding downstream 643255 41171725 ~ 41174790 (-)
G46666 NA non-coding upstream 107042 41940434 ~ 41962922 (-)
G46708 NA non-coding upstream 660624 42494016 ~ 42494563 (-)
G46711 NA non-coding upstream 721225 42554617 ~ 42554906 (-)
G46712 pacsin1a,pacsin1b,LOC108427734,LOC106566012,LOC107587581 non-coding upstream 724393 42557785 ~ 42558015 (-)
G46713 NA non-coding upstream 729248 42562640 ~ 42563406 (-)
AMCG00013732 NA other downstream 1180817 40618343 ~ 40637228 (-)
G46423 NA other downstream 1209517 40603601 ~ 40608528 (-)
G46418 NA other downstream 1230653 40586816 ~ 40587392 (-)
AMCG00013730 NA other downstream 1389420 40386061 ~ 40428625 (-)
G46333 NA other downstream 1542947 40273391 ~ 40275098 (-)
AMCG00013773 NA other upstream 595385 42428777 ~ 42455758 (-)
G46742 NA other upstream 866114 42699506 ~ 42701068 (-)
AMCG00013820 tmem167b other upstream 1775890 43609282 ~ 43614579 (-)
AMCG00013846 NA other upstream 3505467 45338859 ~ 45344015 (-)
G47261 NA other upstream 3789846 45623238 ~ 45623895 (-)

Expression


Co-expression Network