AMCG00015419 (klc2,LOC107747958,LOC107728029,LOC106578016)


Basic Information

Item Value
gene id AMCG00015419
gene name klc2,LOC107747958,LOC107728029,LOC106578016
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9174843 ~ 9184406 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015419
AGGAGGAGAAAGGAGGCGAGGGGTGACGTCACCGCGCCTGGGCGAGGGGGATTGTGGGAGATTCGCATCCACACACCAACAGCCATTTTCGCTCTGCGGCTGTCAACCAAAAGAGAgggcgagagggagagggaagacacacaatacaacGGCGACGGAGAGGATGGCGACCGGGATGTGGGAGAGCAGCGACAGCCTCGCCTGCTGTCGACAGTACATAATTGCACTGTCATTCCGGTGCTGGGACAGGAGACTCGTCGAGCCGCAAACGCGCAGGAAAGCGACCGCAGCAGGAGCGGTTATCGGGCTTTAATACGCGGAGACGGCGCGTCGAGCTGCGCCTGCAGAGCCGCCTCTGAGCCGGAGCTGCGCAGCGCGTCCACAGGCGCAGTAAGTGTCACCGATCTCAATCTGTCCACCGACCCCCGTGTGACCCCCCGTGCAATGTCCACGATGGTGTACCCCCGGGAGGAGCCCCTGGAGCGGCTGTCCCAGGATGAGATCGTGCTGGGCACCAAGGCGGTGATGCAGGGCCTGGAGACGCTGCGCTGTGAGCACGCCGCCCTGCTGACCGCCCTGCTGGAGGGTGGGGGCGCGGCGCCAGCCAGCAACAACGTGGTCAACGCGGCCAACGCGCACCACGACGCGGCCGTCCACAAGTCCAGCCTGCTGCGCAAGAGCATGGACGCCATCGAGCTGGGACTGGGGGAGGCACAGgtGATCATCGCCCTGTCCAGCCACCTGAGCGCGGTGGAGTCGGAGAAGCAGAAGCTGCGGGCCCAGGTGCGCCGGCTGTGCCAGGAGAACCAGTGGCTGCGGGACGAGCTGGCGGGCACCCAGCACAAGCTGCAGCGCAGCGAGCAGAGCGTCGcccagctggaggaggagaagaagcaCCTGGAGTTCATGAACCAGATCAAGAAGTTCGACGACGATGTTTCGCCTTCGGATGAGAAGGCCAGCGAGACGTCGAAGGACAGCCTGGACGACCTATTCCCCAACGATGACGACCAGGGCCCAGcCCAGCAGCACAGCGGGGAGGCGGCGGCGCAGCAGGGTGGCTACGAGATCCCGGCACGCCTGCGCACCCTCCACAACCTGGTGATCCAGTATGCCTCGCAGGGCCGCTACGAGGTGGCCGTCCCCCTCTGTAAGCAGGCACTGGAGGACCTGGAGAAGACCTCGGGCCACGACCACCCCGACGTGGCCACCATGCTCAACATCCTGGCCCTGGTGTACAGggATCAGAACAAGTACAAGGAGGCGGCGCACCTGCTGAACGATGCGCTGGCGATCCGTGAGAAGACACTGGGCCGGGACCACCCCGCCGTGGCCGCCACCCTCAACAACCTGGCCGTGCTGTACGGCAAGCGGGGCAAATACCGCGAGGCCGAGCCGCTGTGCAAACGGGCCCTGGAGATCCGAGAGAAGGTGCTGGGCAAGTACCACCCTGACGTGGCCAAGCAGCTGAACAACCTGGCGCTGCTGTGCCAGAACCAGGGCAAGTACGACGAGGTGGAGTACTACTACCAGCGGGCCCTGGAGATCTACCAGACCAAGCTGGGCCCTGACGACCCCAACGTGGCCAAGACCAAGAACAACCTGgccACCTGCTACCTGAAGCAGGGGAAGTTCAAGGACGCCGAGAGTCTGTACAAGGAGATCCTGACCCGGGCCCACGAGAAGGAGTTTGGATCAGTCAACAgTGACAACAAGCCCATCTGGATGCACGCGGAGGAGCGTGAGGAGAGCAAGggGAAGCGCAGGGACACAGGTGCCTATGGCGAGTATGGCAGTTGGTACAAAGCCTGCAAGGTCGACAGcccCACTGTCAACACCACTCTGAAGAGCCTGGGTGCGCTGTACCGCCGGCAGGGCAAGCTGGAGGCGGCCGAGACGCTGGAGGAGTGTGCCACCAAGACACGCAAGCAGGGGATTGACGCCATTAACCAGAGTAAGGTGGTGGAGCTGCTAAAGGAGGGGGCCCCAGCAGGTGGGGAACGACGGCAGAGCAGGGACAACCTGAACGGGCCCGGGGGACCCAGGGGGGACTCCGGGGCCGAGGGGGAGGAGGGCGCTGAGTGGAATGGGGATGGCAGTGGCGCTCTGAGGCGCAGCGGCTCGTTCGGGAAGATTCGTGACGCTCTGCGCCGGAGCAGTGAGATGCTGGTCAAGAAGCTGCAGGGCAGTGGCCCCCAGGAGCCCCGCAACCCCGGGATGAAGAGAGCCAGCTCCCTCAACTTCCTGAACAAGAGCGCAGAGGACCCCACACAGCAGCCCCCAAGCAGCCTATCAGAGTCCAGGGGCCTGAGCGCCAGCAACGTGGACCTGTCAAGACGCAGCTCCCTGATTGGATGAAGAGCGGAAGTTTAGGGGTGGGGGGTAGGGGTAGTGTGATGGTGCCTGTGGAGGGGATTGGAGACGAATTGTGATGGAAAGAAAGTGATCCCCCTGCCCCCTTGggagttctttttttttttcagcaactttttggcctttaaaaaaaacaaaaaaaaaagggcaagTTTAGTCATAATGCCCTTGCTTTGGCACAGCGTGTGCTGTGAGGAGACTAGGTGCATTAAGACACCCATGACTGGTTTgctaaactgtaatttgtaacagttgggggaggggggggaagagatgcttatttaaaatagttaccCAGCATGCTTCTTTCTAGGTCTGGGCTCTGAGTGTCTTGCTGGAGGGTGCCCTCTATTGGTGGGAGACAGAAACACTCGGCTTTAACCACATGGAGAAAGATAAACCGTgagacggagggagggagggttaGTTGGTAAAATAATCTGCATCTATAATCTTGGCTCCAAACCtgaagagaagaggaggggaATTCTTCAAGAAGCTACTGGGTCTGGTTTTATTTCTCTTGCCTTCTCTGAGACGCTCAAACCCCAGACTTCATAagtaaagttaaattaataaattcacTCTAGGAGGCATGAAGTTTTGCGAATGCTCAGCACCTGTCAGTTTAAACTCACCTTTCTTAGCAGAATTGTACTGGGGGCAAATAAACCTCAAtcgaggggggcgggggggggtttGCTGTAGACTTTTTGAAGCACTGAGAGTTCAGGGTAGCCGTCTCTGGGCCTGATCTGATGCAAGTGCCGATCTTTGACCTTGGAGCTAGTTTTCCAGTTTCCTCAGCTCAAgcaggggaggtggggggttttgttttggaaaagtcaattcattaattaattaattaaaagaatcccccccaccctcccccagAAAATCTTACTTTATATGAAACTTcactggaaataataataataatcaaaacaatggCGAGAGCAGCATTGTTGATTGTTGAGACCTCACATTTTGCCTTtctttatgtgtgtatataggtataaattattatttttaaactcttttgtttgtgtaaatagCTGTGGGGGGGTTGTTTACAGGGGGGGTGGTCTCAGAGCTGACTGGGGACAAGACCAATCAGACCAATTCACGCTTGGATTGGAGGGTGGggttgttgtattatttattttattattttttattttctgccatTTGCTTTTCTGCCAATGCATTATGCATTGTGCATTGctctctctgtgcctctttCTCAGCCTTGgtttcctctctttcttttttctctcctctctgccttttctctgtctccctgttcCCAAATGCTAGCAGGCCTTGTTATCCCAAATTCTTCCTCcttttctgaagaaaaacaatggcATTCATCTCAGCAGCTCTTATAGGATGGGGAGCTGGTGATCCACAGACACTGAGCACGGTCCCCTGCCATCGCTGTGGCGGTCGATCccctgtaaaaaaataaagattaaatgaaataaactcGAGTTGGGCTCCCAAGAGGCTCTCAGAAAGAGGCCCCTTTTGTAGCAGCAGTGTGTGccgatgagctcctctcactCCCGGGGATGACGCCTGTTGCCCCAGACTCGAACATGGTCTGCCCAGTCTGGGTTCCTGTGTACCATAGCTCTTCCCCAGTTACAGATCAGAACTTGGGGGAGGCACAATAGAAGTGGATCAGGACCTGGGCTGGTGTGATAatgaagggggggagggggggatctCTAAAGTGTCAGCTGTACTCAAAGGGGCAgggttttaattgattaatgaatGAGCTTAATGAAGTGGTGGGGTGGACCGGTACTCTCCTGGACAGTGGGGTGCCCCCCTTACTGCTGTAGAGGTGGGGGTGGAGAGAGGCTCAGACTGAGGTGCTGTGTATGGGGCCTCAGTCAGTGGGGAAGACTGACTGgcctggggggagggggagggagagggtcaGGGTGTGGGGCTGACTGCCTGACCCCTGACACCATGTATGTTACACTGGAGGCTCAATAAACATCCACTTTTC
>TU122046
GGATGGCAGTGGCGCTCTGAGGCGCAGCGGCTCGTTCGGGAAGATTCGTGACGCTCTGCGCCGGAGCAGTGAGATGCTGGTCAAGAAGCTGCAGGGCAGTGGCCCCCAGGAGCCCCGCAACCCCGGGATGAAGAGAGCCAGCTCCCTCAACTTCCTGAACAAGAGCGCAGAGGACCCCACACAGCAGCCCCCAAGCAGCCTATCAGAGTCCAGGGGCCTGAGCGCCAGCAACGTGGACCTGTCAAGACGCAGCTCCCTGATTGGATGAAGAGCGGAAGTTTAGGGGTGGGGGGTAGGGGTAGTGTGATGGTGCCTGTGGAGGGGATTGGAGACGAATTGTGATGGAAAGAAAGTGATCCCCCTGCCCCCTTGggagttctttttttttttcagcaactttttggcctttaaaaaaaacaaaaaaaaaagggcaagTTTAGTCATAATGCCCTTGCTTTGGCACAGCGTGTGCTGTGAGGAGACTAGGTGCATTAAGACACCCATGACTGGTTTgctaaactgtaatttgtaacagttgggggaggggggggaagagatgcttatttaaaatagttaccCAGCATGCTTCTTTCTAGGTCTGGGCTCTGAGTGTCTTGCTGGAGGGTGCCCTCTATTGGTGGGAGACAGAAACACTCGGCTTTAACCACATGGAGAAAGATAAACCGTgagacggagggagggagggttaGTTGGTAAAATAATCTGCATCTATAATCTTGGCTCCAAACCtgaagagaagaggaggggaATTCTTCAAGAAGCTACTGGGTCTGGTTTTATTTCTCTTGCCTTCTCTGAGACGCTCAAACCCCAGACTTCATAagtaaagttaaattaataaattcacTCTAGGAGGCATGAAGTTTTGCGAATGCTCAGCACCTGTCAGTTTAAACTCACCTTTCTTAGCAGA

Function

symbol description
klc2 Acts upstream of or within swimming behavior. Predicted to be located in cytoplasm and microtubule. Predicted to be part of kinesin complex. Human ortholog(s) of this gene implicated in SPOAN syndrome. Orthologous to human KLC2 (kinesin light chain 2).

NR:

description
PREDICTED: kinesin light chain 2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005871 kinesin complex cellular_component
GO:0003777 microtubule motor activity molecular_function

KEGG:

id description
K10407 KLC; kinesin light chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015419 True 4399 mRNA 0.56 16 9174843 9184406
TU122046 False 934 TUCP 0.50 3 9176218 9178667

Neighbor

gene id symbol gene type direction distance location
AMCG00015408 NA coding downstream 120751 9050001 ~ 9054092 (-)
AMCG00015411 frmd8,LOC106563469 coding downstream 145773 9024644 ~ 9029070 (-)
AMCG00015410 vps51 coding downstream 184602 8983579 ~ 8990241 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding downstream 191957 8977099 ~ 8982886 (-)
AMCG00015405 NA coding downstream 200334 8969459 ~ 8974509 (-)
AMCG00015420 NA coding upstream 1868 9186274 ~ 9201237 (-)
AMCG00015421 sf3b2,LOC106608993 coding upstream 33994 9218400 ~ 9230633 (-)
AMCG00015418 NA coding upstream 46907 9231313 ~ 9234491 (-)
AMCG00015422 mta2,LOC106577523,LOC106608586 coding upstream 53057 9237463 ~ 9251604 (-)
AMCG00015424 NA coding upstream 69681 9254087 ~ 9258101 (-)
G97860 NA non-coding downstream 64793 9094155 ~ 9110050 (-)
G97805 NA non-coding downstream 102705 9067943 ~ 9072138 (-)
G97801 NA non-coding downstream 392210 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 455284 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 506792 8664075 ~ 8668051 (-)
G97906 NA non-coding upstream 199102 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 496759 9681165 ~ 9681682 (-)
G98012 NA non-coding upstream 521321 9705727 ~ 9706031 (-)
G98126 NA non-coding upstream 745156 9929562 ~ 10017869 (-)
G98138 NA non-coding upstream 752670 9937076 ~ 9938322 (-)
AMCG00015415 NA other downstream 18396 9152218 ~ 9156447 (-)
AMCG00015409 NA other downstream 134702 9038596 ~ 9040141 (-)
AMCG00015400 NA other downstream 214699 8954513 ~ 8960144 (-)
AMCG00015394 NA other downstream 335864 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 380069 8789660 ~ 8794774 (-)
G97897 NA other upstream 168811 9353217 ~ 9355732 (-)
AMCG00015460 NA other upstream 624412 9808818 ~ 9815466 (-)
G98094 NA other upstream 653096 9837502 ~ 9839510 (-)
AMCG00015471 NA other upstream 694053 9878459 ~ 9896512 (-)
AMCG00015468 NA other upstream 789550 9973956 ~ 9986628 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000343_00454724_00464029 KLC2 coding CI01000343 null 454258 ~ 464093 (+)