AMCG00015694


Basic Information

Item Value
gene id AMCG00015694
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16592228 ~ 16611444 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015694
GTGAAgaaattcaaagcattcaagGGAGATGCAAGTAAACTGACACCAGtggattattttgtgtattgtttaatacAGCTGCCAAGatttgatgTTCGTGTTGAAGCCATGGTTCTTAAGGAAGAATTCTTTCCATCCTGCTCTGCTGTGAATGTTGAAATTGAAGTTATTCGTATGGCTATAGAAGAACTGATGACATGTGAAGAGCTTCATGCTATTCTCCACTTAGTTCTTCAGGCTGGAAACCTCATGAATGCAGGAGGATACGCTGGCAATGCAGTAGGCTTCAAGCTGTCATCCTTACTGAAACTTGCGGATACAAAAGCCAACAAACCAGGGATGAACCTGTTGCACTTTGTTGCATTGGAAGCCCAGAAGAAGGATGAGACCCTGTTAAAATTTCCTGAAAAGTTGCAACATGTTCAAAGTGCAGTCAGAATCTCAATGGAAAATATTGAAGCAGAGTTCCAGTCCTTGTACACTAGAAGTAGCTCAGTAGAAGAAAAGATCCAGCAGGACACAGAGCTCCTGCAACAGCTGGAACACTTTCTACAGAGTTCAGTGAGGACCCTCCAAGATCTGAAGAAGCACCTCCTACAGCTGCGGAAGGAGGGAAActgtttaattgatttcttcTGTGAAGACAAAGAATCCTTTAAACTGGATGAGTGCTTTAGAATATTCCAGGATTTCTGCCTCAGGTTCAAAAAGGCTGTTAAGGATAATCTTGAGAGGGACCTGAAGGAGGCTGCCAGGCAGAAGCGGCTTCGGGAACTGGAGGAGAAGAGGCATTCTTGGGCAGGTGGGGATCAAGGCAGGGGTTTTGGTCGTAGTAGCAGTGAGAATGATGTGGAGATGCTAACCAAGGAGGGCCTCCTGGACTTCTTTCAGCACAAACCCCACAGCCCCCTGACCCGCTCTTCCAGTGTAAAGCGCTCCAGGCACTCAGTGGCTGCCATGGCTGACCGAGAGCTCTGCAGCTTCCTTGGGGGCTTGAGGTCAGAGGACTCCACCAAGTTTAACAGCCTTCCCAGGATCTCTAGGTGCCACTCCAGGAAAACCAACCCATGGATGGATTCCCCAAATGACAATCAGGAACTTGGTGTGAAATGCCACAACTTAGACAGGAAAGACAGTGTCACATTGAATGCAGACCAGGAAGATTTTTCACAAACTCCTGTGGTTGAGTTTAAAATTGGTTTGAATATAATGGAAGATCCACATGTCATTAATGGCAATACTACTGTTGTTTCAGAAAGTGGtgggataaataataataaccactacaaaaatgtttttgaaaagacTAACGGTACCAGTCATGAGCAAATGAATGTCAGTGTGTCAAGGCACACGTTGGTCCCTGGACTTCAGGTATTCAGTCTCATTACtcctattaataataacagtatgtACTTAGTGAACCAGGGAGATGTTTGTTTGGATAATTTGAAGATGGAAAAAGATACCCTAAAAAGTCCTGAAATTTTAGATATGGATACCCCTCCCTCTTCTAAGAGctccaaaacagaaaatgattcCAGAACAGAATCTGATTGTAAAatggaatctttacagtttaCAATCTCTTCTCAAAATGAAGAGGAAGGGGACATTAGCACTATTTCCTCAACGTGTGATATACATCTTCCTTTAGATGACTCTGCAACAAACAAGAAACCTATACTTTACATAATGGATTGTACAGAGACTGACCATTCTACATCCTTGGACTACTCTCAAATCCATGACAACCTTCCTGTTTTTAAGGAAGACAATAACTTTGGAAACCAAAATGTGCATACTAGTATGGACAATCTCAAAGACCCAAGTTCAATTTCTTCTAATTTGGAATCAGAATCCACTAATGAGGAGTCGGTTTCTGTTACTCAGTCTGCCACCACAGAGGAGAAAGCTTGTGATAGCTGTgggacaacaaaacaaaagaaaaatgagaaaatggTACAGGTCAACAGTAAAAAAACTGGGCCTAGGAAATCGAAGCAATCTTCAAAAATACCAGGTACTCGAAATAGTGGAACTGCCCATGGTGTAAGAACATTACCTGCCACAGAAAATCAAAAAATGCGAAAAGTGATGCCTATATCCAGACAGAGCAGGTCTGGCAACTCTGTAAAGACAACAGAGTCATCAGcctatgaaaagaaaaataaagaactgaGGCATCCACACCAGGATCAGAGCAATCCAGGGAGAAAGACTGAATACCACACAAGTACCTCTCAAAGCTCTAACGTTCCTGCAGAGAACCAAAAAGTTCACAAGGGCACACCATCCAGTACTAGTAACAATTGGCTTAGAGAACAAAACCCACGCACCCACTCAATCAGGAAGCCCAGTGCCAAACCCGTACGTAACATTCCTAAGCCCAAGCCAGAGGAGAAGATGTGCCGTTCCACTATGCGAGCCCTGGCTCAGGCACAAGGAGCAGCTGAAGGGAGCAGCTGCCAGACTCCCACTCATAGCAGCAAGCCCTTGTCTGGCACTCCCAGTTTTGCCCGTGGAACAGTTGCCTCTTCCTCTAGGAGGATGAAAAAAGACCTGACCACTAGTTCATACCCCTCATCGCCTTCTAACAGTGCCACTCCAACCAGAACTGGCTCCAAGAAGCAAACCGTGAAAGCCAACCCTAGTAACAGTGTGTTCCCTCCAAAGGATGAGGATATCGTCCAGGGCACATTAAAGAGAGCGCAGAGTGTCAAAGTCTCCAGCAAGAACTGGAATGGCAGTGAGATGCCGCCTCATAAGAGAGACCCGAGCAAAGGCAGCAGCTTTTCTGAAAAGTCAGTGGTCCAATCAAAAGACTTAAGCAAGTTAACTACAGAAAAAGCTCTAAAACCTATTTGGACACACAAGCCGAGGACACAGCCGCTGCCCTGGAGGCCTCTGCCCGTCCCTCAGgagccgtctctctctcccgcccTCACCTGCTGCCTGCTACTGTACCTGCTGGAGCGCAGTGTGGAGTCTGGGGGTCTGGACAACAACGCTACCCTCAGCACACACctcacagcagcagcaccaccacACTGGCCCTCTGTCTCAGCCTGCAGTGAAGCGACTGGCGCAGGACTGACTGCCCTgcaccacaacacacactgcttcTGCTCCACTCCCACCTGGACTGACCAGTTCCTCAGGATCACCTGCACAGACGTGGAGGAAACAAGGGTTCCAGCACAGGGAGGGGCAGCTGCAGTCTGTATGGGTATGAGTAACTGA
>TU124647
ATTCCATAAAGGTTGTTCAGTTCCTCCCTAAGTCTCTCCTCCAACTGAGATGTAAATTTCCagacagaggtcagaggtcacagtgATGTCAGAGCAGTCCTTGTTACGTAGAGGGGGGCGCAGGGCTGGGAGACTCTACAGCAGAATAGAGGAGACACTCATCATCATGGAGGGGTCAATAAAGGTCACTGTGAATAAAGTCACCGTGCTGACCTGTGGGAAGTGGATGTGGtcctcagtgtgtgagagcTGCTCCAGCTCAGTGCGTCTCCTCTTCAGCTCAGTGATCTCCTGCTCCAGCAATTCAATGCGCCCTTCAGCCCGCCTCTCCGCCGCTCTCTGCTTCTCTTCAGTCAGCTCCAGCAGCTCGGCCTGGCTTCTCTCaaccaaattatattattttacataggaaatgacaacacaaacaacattcaatagtttatatcaaataaatatttaattgttaataaaaactCTGATAAAAAGCATTCTCACAGTTGCAAAAACAACCACTTCTTCTCCAAACCTTCTCAGACATATTCAACTGATGCACTAATTGGTAGTATGTAATACTTGTTCTTACTGTTGTTCCTAGTTTGCAGGGCAGATATCTGCTATGAATTTATCTCCAGCAGCAGGAAGAAATGTATACAGTTCACTTTACATCATGTTTCggacatgttttaatataagTCCTTGAGGAAACTGAAAAGATACACAGAGCAGGGATTTCCTTTCccaaaaaataatggaaaaaataacagtCCTACATTTGCAGCTGTACCTCCAAAGTTAatcaggaaaaaaactaaagaggCTCCAGAAAAATCCTGAGCAGTGAGATGATTATTTTCAGCCAGTATGAGCCAACAGTACATACAACctattgtttgtgtattgtCTGCTCTCCCACTCAGAGGACACAGCCGCTGCCCTGGAGGCCTCTGCCCGTCCCTCAGgagccgtctctctctcccgcccTCACCTGCTGCCTGCTACTGTACCTGCTGGAGCGCAGTGTGGAGTCTGGGGGTCTGGACAACAACGCTACCCTCAGCACACACctcacagcagcagcaccaccacACTGGCCCTCTGTCTCAGCCTGCAGTGAAGCGACTGGCGCAGGACTGACTGCCCTgcaccacaacacacactgcttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015694 True 3243 mRNA 0.46 10 16592228 16611444
TU124647 False 1163 lncRNA 0.47 1 16592345 16593507

Neighbor

gene id symbol gene type direction distance location
AMCG00015696 NA coding downstream 1229 16581695 ~ 16590999 (-)
AMCG00015695 NA coding downstream 13018 16575258 ~ 16579210 (-)
AMCG00015690 NA coding downstream 45342 16536547 ~ 16546886 (-)
AMCG00015683 NA coding downstream 128288 16460722 ~ 16463940 (-)
AMCG00015680 NA coding downstream 144041 16445972 ~ 16448187 (-)
AMCG00015697 NA coding upstream 4169 16615613 ~ 16650920 (-)
AMCG00015693 NA coding upstream 39754 16651198 ~ 16677591 (-)
AMCG00015702 NA coding upstream 394678 17006122 ~ 17018382 (-)
AMCG00015704 rps3a,rs3a coding upstream 516463 17127907 ~ 17131775 (-)
AMCG00015712 mab21l2 coding upstream 720208 17331652 ~ 17332731 (-)
G99758 NA non-coding downstream 19952 16560585 ~ 16572276 (-)
G99710 NA non-coding downstream 64301 16503791 ~ 16527927 (-)
G99735 NA non-coding downstream 93697 16497485 ~ 16498531 (-)
G99724 NA non-coding downstream 163602 16424750 ~ 16428626 (-)
G99679 NA non-coding downstream 280258 16311708 ~ 16311970 (-)
G99804 NA non-coding upstream 103003 16714447 ~ 16714835 (-)
G99816 NA non-coding upstream 259198 16870642 ~ 16871119 (-)
G99830 NA non-coding upstream 390550 17001994 ~ 17004413 (-)
G99860 NA non-coding upstream 523483 17134927 ~ 17135183 (-)
G99923 NA non-coding upstream 1036607 17648051 ~ 17704580 (-)
AMCG00015691 NA other downstream 56760 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 119051 16467299 ~ 16473177 (-)
G99646 NA other downstream 370073 16221765 ~ 16222155 (-)
G99605 NA other downstream 489772 16017583 ~ 16102456 (-)
AMCG00015666 NA other downstream 888938 15687642 ~ 15703290 (-)
G99939 NA other upstream 1226136 17837580 ~ 17837942 (-)
AMCG00015723 lsm6,LOC106610200 other upstream 2016161 18627605 ~ 18630665 (-)
AMCG00015752 NA other upstream 3363512 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 3615923 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 6069250 22680694 ~ 22702249 (-)

Expression


Co-expression Network