RNA id: TU124647


Basic Information

Item Value
RNA id TU124647
length 1163
lncRNA type sense_over
GC content 0.47
exon number 1
gene id AMCG00015694
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16592228 ~ 16611444 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCCATAAAGGTTGTTCAGTTCCTCCCTAAGTCTCTCCTCCAACTGAGATGTAAATTTCCagacagaggtcagaggtcacagtgATGTCAGAGCAGTCCTTGTTACGTAGAGGGGGGCGCAGGGCTGGGAGACTCTACAGCAGAATAGAGGAGACACTCATCATCATGGAGGGGTCAATAAAGGTCACTGTGAATAAAGTCACCGTGCTGACCTGTGGGAAGTGGATGTGGtcctcagtgtgtgagagcTGCTCCAGCTCAGTGCGTCTCCTCTTCAGCTCAGTGATCTCCTGCTCCAGCAATTCAATGCGCCCTTCAGCCCGCCTCTCCGCCGCTCTCTGCTTCTCTTCAGTCAGCTCCAGCAGCTCGGCCTGGCTTCTCTCaaccaaattatattattttacataggaaatgacaacacaaacaacattcaatagtttatatcaaataaatatttaattgttaataaaaactCTGATAAAAAGCATTCTCACAGTTGCAAAAACAACCACTTCTTCTCCAAACCTTCTCAGACATATTCAACTGATGCACTAATTGGTAGTATGTAATACTTGTTCTTACTGTTGTTCCTAGTTTGCAGGGCAGATATCTGCTATGAATTTATCTCCAGCAGCAGGAAGAAATGTATACAGTTCACTTTACATCATGTTTCggacatgttttaatataagTCCTTGAGGAAACTGAAAAGATACACAGAGCAGGGATTTCCTTTCccaaaaaataatggaaaaaataacagtCCTACATTTGCAGCTGTACCTCCAAAGTTAatcaggaaaaaaactaaagaggCTCCAGAAAAATCCTGAGCAGTGAGATGATTATTTTCAGCCAGTATGAGCCAACAGTACATACAACctattgtttgtgtattgtCTGCTCTCCCACTCAGAGGACACAGCCGCTGCCCTGGAGGCCTCTGCCCGTCCCTCAGgagccgtctctctctcccgcccTCACCTGCTGCCTGCTACTGTACCTGCTGGAGCGCAGTGTGGAGTCTGGGGGTCTGGACAACAACGCTACCCTCAGCACACACctcacagcagcagcaccaccacACTGGCCCTCTGTCTCAGCCTGCAGTGAAGCGACTGGCGCAGGACTGACTGCCCTgcaccacaacacacactgcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124629 lncRNA downstream 20069 16560585 ~ 16572276 (-) True G99758
TU124557 lncRNA downstream 64418 16503791 ~ 16527927 (-) True G99710
TU124602 lncRNA downstream 93814 16497485 ~ 16498531 (-) True G99735
TU124598 lncRNA downstream 119168 16470907 ~ 16473177 (-) True AMCG00015681
TU124575 lncRNA downstream 163719 16424750 ~ 16428626 (-) True G99724
TU124648 lncRNA upstream 5586 16599093 ~ 16600378 (-) True G99777
TU124679 lncRNA upstream 120940 16714447 ~ 16714835 (-) True G99804
TU124692 lncRNA upstream 277135 16870642 ~ 16871119 (-) True G99816
TU124706 lncRNA upstream 408487 17001994 ~ 17004413 (-) True G99830
TU124745 lncRNA upstream 541420 17134927 ~ 17135183 (-) True G99860
AMCG00015696 mRNA downstream 1346 16581695 ~ 16590999 (-) True AMCG00015696
AMCG00015695 mRNA downstream 13135 16575258 ~ 16579210 (-) True AMCG00015695
AMCG00015690 mRNA downstream 45459 16536547 ~ 16546886 (-) True AMCG00015690
AMCG00015691 mRNA downstream 57055 16524114 ~ 16535290 (-) False AMCG00015691
AMCG00015681 mRNA downstream 121399 16467299 ~ 16470946 (-) False AMCG00015681
AMCG00015697 mRNA upstream 22106 16615613 ~ 16650920 (-) True AMCG00015697
AMCG00015693 mRNA upstream 57691 16651198 ~ 16677591 (-) True AMCG00015693
AMCG00015702 mRNA upstream 412615 17006122 ~ 17018382 (-) True AMCG00015702
AMCG00015704 mRNA upstream 534400 17127907 ~ 17131775 (-) True AMCG00015704
AMCG00015712 mRNA upstream 738145 17331652 ~ 17332731 (-) True AMCG00015712
TU124562 other downstream 56877 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 370190 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 489889 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 889055 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 1331861 15259461 ~ 15260484 (-) True G99454
TU124837 other upstream 1244073 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2034836 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 3381449 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 3676322 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 8399446 24992953 ~ 25000890 (-) True G101067

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017983 True 1282 processed_transcript 0.43 6 NC_007126.7 18177941 ~ 18180824 (-)