AMCG00018280


Basic Information

Item Value
gene id AMCG00018280
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6710482 ~ 6747438 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018280
CAGCAACcagacacactggacacaggcATTCGGATTGGCAGCTTCCTCTGATCTTCCAAGACAACTCTCTGCCTAGATCGTTGAGACGATGAACATCACTACAAACACCTCcaaccccaccacccccacccatGTCACCGGGGGGGCCACAACTCCAAGGAAGGGACCTCCCAAATTCAAGCAAAGGCAGACCCGACAGTTCAAGAGCAAGCCCCCAAAGAAAGGAATTAAGGGATTTGGTGATGACATTCCTGGAATGGAGGGTCTGGGAACAGATATTACGGTCATCTGCCCCTGGGAAGCATTCAGCCATTTGGAGCTACATGAGCTGGCACAGTTTGGAATCATCTGAACCAGCACTTAGTATCCAGAAGAGCCTCTATTACTCTGCAGGACCTGACTTCACCCCCTAGACAGCTGGACACacgtttgtttttagttttttttctactGCACCTGACTCTAGCAAACTAGCAAAGTAGCTCTCCTTGAAATGTACCTACGACGGAGTGTCCGGTGGCAAAGTGTGGGAGTTGAAAATGGGCTTGACAAAACGTCAGGCCGAGGAGAAAGTTACAAAAAGTGTGGGGCCGTGTGGTGCTAAGATAAGAAGAGAACCAAAGGctagagacaaaaataaaaacccttcGAGATTCCCGAAGGAAAGAGCCTATCCTAATAACCAAAGAATATCCTTTGAACAACTCATTTTCTGTTATGTTTACAAAGCGCCACCAGGCATTCAAATACAGTACACAGTCACACTATTTCATGGGAATCTTAAAGGgtttttcctgtttgttgttttgttttttgtaagggAAACTATGTGATGCtcatgtctttttaaaatcctgtaCATCCCTGTTACTGTAATGAAATCTCTGGATGCACACagattactgttatttatttattttagctatGGTGAGCTGTTGTGTATgagaaatctttattttatttttttgcatgtcTGTAAATGCACTATATATGCCATGTAATTCAGTCACAATTATATTTAGATAGTGTAGATGAGAGAAGAGATTGGCTTTAGCAGAAATATAGTAAATGCAATGCCCTAGTGCCTACCCCTAGCTGTAAACTGTTCTCTCAATGTTCTCTCTCCTCATATTGCATACTTTATTGTAacaattttcacaaaacattctCGTTATCTCTTATAAAACTAACTTATCTTTGATTTCACGTTTACTGTCTTAGAACTTGTAGAAGAACACAAAACCCCCCACTAAAAATCACTGTACTCACTTCTAAACTGTCCAATCTACTCCGTTCCTTGTTGTGTCTTTTTGTCCATCAATAAAGTCTGTCTTCTTTTACTTCACAATTGCTTCCCTTCTTTTTCTACTACTTCGATTCCTCAAACATCCATTATATCATGC
>TU144612
ATGTCATCAAGTGGAGTGAACACCTTATAAAGCCCAAGCTTCAGCCAGGACCAGCCCAGAGCAGCAACcagacacactggacacaggcATTCGGATTGGCAGCTTCCTCTGATCTTCCAAGACAACTCTCTGCCTAGATCGTTGAGACGATGAACATCACTACAAACACCTCcaaccccaccacccccacccatGTCACCGGGGGGGCCACAACTCCAAGGAAGGGACCTCCCAAATTCAAGCAAAGGCAGACCCGACAGTTCAAGAGCAAGCCCCCAAAGAAAGGAATTAAGGGATTTGGTGATGACATTCCTGGAATGGAGGGTCTGGGAACAGATATTACGGTCATCTGCCCCTGGGAAGCATTCAGCCATTTGGAGCTACATGAGCTGGCACAGTTTGGAATCATCTGAACCAGCACTTAGTATCCAGAAGAGCCTCTATTACTCTGCAGGACCTGACTTCACCCCCTAGACAGCTGGACACacgtttgtttttagttttttttctactGCACCTGACTCTAGCAAACTAGCAAAGTAGCTCTCCTTGAAATGTACCTACGACGGAGTGTCCGGTGGCAAAGTGTGGGAGTTGAAAATGGGCTTGACAAAACGTCAGGCCGAGGAGAAAGTTACAAAAAGTGTGGGGCCGTGTGGTGCTAAGATAAGAAGAGAACCAAAGGctagagacaaaaataaaaacccttcGAGATTCCCGAAGGAAAGAGCCTATCCTAATAACCAAAGAATATCCTTTGAACAACTCATTTTCTGTTATGTTTACAAAGCGCCACCAGGCATTCAAATACAGTACACAGTCACACTATTTCATGGGAATCTTAAAGGgtttttcctgtttgttgttttgttttttgtaagggAAACTATGTGATGCtcatgtctttttaaaatcctgtaCATCCCTGTTACTGTAATGAAATCTCTGGATGCACACagattactgttatttatttattttagctatGGTGAGCTGTTGTGTATgagaaatctttattttatttttttgcatgtcTGTAAATGCACTATATATGCCATGTAATTCAGTCACAATTATATTTAGATAGTGTAGATGAGAGAAGAGATTGGCTTTAGCAGAAATATAGTAAATGCAATGCCCTAGTGCCTACCCCTAGCTGTAAACTGTTCTCTCAATGTTCTCTCTCCTCATATTGCATACTTTATTGTAacaattttcacaaaacattctCGTTATCTCTTATAAAACTAACTTATCTTTGATTTCACGTTTACTGTCTTAGAACTTGTAGAAGAACACAAAACCCCCCACTAAAAATCACTGTACTCACTTCTAAACTGTCCAATCTACTCCGTTCCTTGTTGTGTCTTTTTGTCCATCAATAAAGTCTGTCTTCTTTTACTTCACAATTGCTTCCCTTCTTTTTCTACTACTTCGATTCCTCAAACATCCATTATATCATGCTCCATACCCTGCACTTCCCAGAAACTGCATATGTCTGTAGACTGCCTGACCCTCCTCACTCCACTCCAGATGCATGCTATTGTTTCTTGGAAATTAGCTCCTGACCTCTTCCTTCCCTGTCTTCCTAAACCTCTTGTCCTATGTTTTAATTAGCTCCCTAATCTGTAACTAGTGACATGTGGAAGGAGGGGTGGTCATGCTGTTTGCTGGGGCCCCATCTTGTCTGCTCATAAATTGGATTAGATTTCACTAGGAGCTCAGGACAGCCGACCTAGAAGATTGAAAGAAACCAATAGCATAGAATTACCAGGGATTTGGAAAAGTAGATGTCTTAGTGAGTTAACGTCTAAGCTTTCCCGGATAGCCGCTCTCGGATCCGATTGAGGTCACATGTGGAAACCGAGTGACAGTCAATTACTGTGTCTGCGCAATGGAATTTCAATCTGATTTCCATGGCTGCTAAATAACTTTATTGCATCAGCGTACAAGCGCAGTCAACCGCACAGCTTTTAATGGCAATGTTTACTTCTTCATAAGCTATTATGGAAACATAAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018280 False 1403 mRNA 0.41 4 6710543 6713457
TU144612 True 2019 lncRNA 0.42 5 6710482 6747438

Neighbor

gene id symbol gene type direction distance location
AMCG00018282 NA coding upstream 6351 6688637 ~ 6704131 (+)
AMCG00018279 usp7 coding upstream 92864 6599598 ~ 6617618 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding upstream 345242 6339451 ~ 6365240 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding upstream 400639 6306395 ~ 6309843 (+)
AMCG00018277 grin2a,LOC107568390,LOC107690256,LOC107685916,LOC108413991 coding upstream 460942 6249124 ~ 6249540 (+)
AMCG00018295 NA coding downstream 37812 6785250 ~ 6790463 (+)
AMCG00018297 naa60 coding downstream 44616 6792054 ~ 6798225 (+)
AMCG00018296 carhsp1,LOC107733846,LOC107576530,LOC107590589 coding downstream 67996 6815434 ~ 6818771 (+)
AMCG00018294 NA coding downstream 80253 6827691 ~ 6828740 (+)
AMCG00018300 NA coding downstream 136497 6883935 ~ 6899668 (+)
G115439 NA non-coding upstream 32129 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding upstream 43259 6658533 ~ 6667223 (+)
G115419 NA non-coding upstream 90385 6618178 ~ 6620097 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding upstream 122073 6525719 ~ 6588409 (+)
G115331 LOC100136012 non-coding upstream 663948 6046030 ~ 6046534 (+)
G115481 NA non-coding downstream 24994 6772432 ~ 6773263 (+)
G115511 NA non-coding downstream 81650 6829088 ~ 6833312 (+)
G115514 NA non-coding downstream 90268 6837706 ~ 6838861 (+)
G115535 NA non-coding downstream 338136 7085574 ~ 7086966 (+)
G115560 NA non-coding downstream 973169 7720607 ~ 7720964 (+)
AMCG00018272 NA other upstream 549866 6155488 ~ 6160616 (+)
G115299 NA other upstream 759465 5949463 ~ 5951017 (+)
G115049 NA other upstream 1946577 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 2106377 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 2517152 4186410 ~ 4193330 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1146189 7893627 ~ 7894449 (+)
G115648 NA other downstream 1372340 8119778 ~ 8122171 (+)
G115789 NA other downstream 1945926 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2452219 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 2492373 9239811 ~ 9245234 (+)

Expression


Co-expression Network