AMCG00019834


Basic Information

Item Value
gene id AMCG00019834
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48363323 ~ 48377033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019834
ATGTTACAGGTGAGGTGTGTCTTTGTGGCCATGCTGCTGGCATGGACCGGCCTTTGTGGGGGCTTCATCCATGGGGAGCCCGACCCTGAGTGTGGCAACAGCCTAGCGGATCAGGTGACCAGAGCCCAGGTCTTCCCTGCAGTGGACATGAAGGCAGCCCAACACATGCAGAAGCAGCAGCTGGAGGTGTTGTTTAGCCACTATGGGGAGAATGGCACCATTTCCTTGAAGGGTCTAAAGAGGCTGCTGCAGAGCATCGGCCTGTTCCGGGCCCGTAGAGTGAATGTGCAACACAGGGAGACATTGCAGGAGCACGAGCACGAGCATTCCCACCAAcatcaccaccaccccccccaaagCGGCCACTCACACCACTCGGAGATCCCAGCCAGcaagaaggtgacagagggcCCCAAAGTCCTGAGAAGCAGCCTGGGCAAGAAGACTGAGGACACGGACAGCCACCACAACCTGTACGCCAAGAAAGGGCTGCAGGAGAGCACCACACCGGCCTACACCACCAACATCCTGCTCAAGTCCCAGGAGGTGCGCAGCCGCAGGAGCACTGATGGCTCCCTGTCACCAGAAGGCGCCTCTAGCCCTGGGCCTGTGGGGGCCAGTGAGCAGTTAGGTAGCCTGCTGtgtttcaatGCTTCCACAATCCTGAACTCCCATGGCATGAACATGGATACGGTCCTGTCGATCGCAGACTTCAGCTTCCTCTGCCCTGCCCTCCTCAACCAGATTGATGGCAGGGCCTGCATTGTGCACCCAGACGTTATCCAAAGTACAGAGAACAACCAGAAAGAGAGCTACATCCAGGCAGGGAGTACTCTAAGTAAGTCCCAGGCACCCCGTCCCCACGCCCACGACAGACACACAACCAACCACAACGACGCTCACCATCACCATGACGCAGAGGAGGAGGACGCCCTTCACTCGGTCTGGAAGGGGCTGACCGCGCTGGGCGGAGTCTACTTCATGTTTCTCATAGAGCACTTCATCACCCTTGGCAAGATGTACAAGGAGAAAAAGCAGAAGCAGACTCAGAAGAAATGGGATCCGaatgaagaaaatatgaacACGGACAAGCTGCCGACTGGAGAAGAAACCACAGATTTAAAACCAAGCGAAGACGTGGAGACAAATGGAGCGGGGGCGTTTGCGGAACCGATACGGTTCTGTGGCGAGAAGGGCATGGGTGTGGTGGGGCGGGGGACgccggaggaggaggaggtgatgTTGGCCCCTGCGGTGCCCCCGCAGGACGGCTACAGCGAGTACACGCCGCAGGACTGCGAGAACAAGTGCCACTCGCACTTCCATGACACGGTGGGGCAGCCGGACGACatgcaccaccaccaccatgactACCACCACATCCTGCACCACCACCACTCCCAGAACCACCATCCACACAGCCACGCGCACGGCTACTCGCACCAGCACTTCAAGGGCGCCGGGGTCGCCACGCTGGCTTGGATGGTCATCATGGGAGATGGGTTGCACAACTTCAGCGACGGCTTGGCCATTGGGGCTGCCTTTACTAAAGGTCTGTCCAGCGGCCTCAGCACATCAGTGGCGGTGTTCTGTCATGAACTTCCTCATGAGTTAGGGGACTTCGCGGTGCTGCTGAAGGCAGGCATGACCGTCAGACAGGCCATCCTCTACAACGCGCTCTCCGCGGCCATGGCCTACCTGGGCATGGCCACCGGCATCCTCATCGGACACTACGCTGACAACATCTGCAGCTGGATCTTTGCCCTGACGGCCGGGCTCTTCCTGTACGTGGCGCTGGTGGACATGGTGCCTGAAATGTTGCACAATGATGCTGGAGATCATGGGTTCAGCCATTGCGGCTACTTCCTCCTGCAGAATGCTGGGATTCTTCTGGGATTCAGCATTTTGCTCCTCATCGCCGTATTTGAACACAAAATCTAAAACATCGGCCTCTGACGAGACGGGAAATTGGCTTGAGATCATCGTACTTACTGGTAAACTCAGATCGGTATATTCGCCAACCCATAGCATTGACCGCATTCTAAGCCACACACTCATATGAAAGATATTTCTgcctttttaaatttatttttgtattactgttacaTACTTTTCTGGAAACATGGCTTTATCTGGatattatttctgttgtgaAATTGCCAATTGAATCATTCCAGTCCCCATCAGGGCTTTGTAGATAAATGGGAAACATGGGACAGTTCTTACTGTTTTAGTAGGGGTGTTTTGGATATACAGAAAGGGTACGAAAGTAAGACCGACAGAAGGAAAGTCTAGTTTAATGTCACAATTGATTAAAAAAgggttacaaaaaaataattaccatATGATTTTGACCTCTTGAAGGGCATTGTAGGAACTGTATTGGGATGCCAGACACCTTCTGGACCaagctgtaagaaaacaatggaaatgaagacagataatgtgtgtatttgtttaagaaGGATATTAAATGTCTGTCATATAAGGGCTGCTTTAAGCGCTTACCTGAATGTggttaatattaatgttattttcattggtTTTTGGGTATGTGGGGGGTTGAGCCTATATTAATATATAGGTCAGGTCAGGAATTCCCTAACAGGTCAACCggttaaaacatttctgtttacatttctcagtttctctcttATTACCTTCGCAACTCAATCTGTtaacagtttttatattttaaaatgtatttcatgcaAAATGTCAATCTGTTACAACCTTCAACATTCAAAGGTACCGCATACCGTTATGGTGAAATCATGCCAAACTTTCATTGCATTCTGTACTGAATAATAAGCATGGCGCTGTGTTGAGGGTGTTTTGATTTCCCTGATGTACGAATAGTGCTTGAGGACTACAATTAATTGGACTACTGAATTTATcagtatgttgttttgtttatttaaaaaaaaaaaagaaagtgaccAATTGTGTATTTATGGCAGCTTTGGATGTAAATTTGTGTGCTTTACATTCCAGAGAAAATACAGTTTACTTCACTGTCTCCTGTCTCCTTTGTGtactttccttttgtttttatatttcatggATTTTTGTTTCCTGCTGAAACATCTGAGATCATCTGTGGGTGTTTTTGAGTTACGCTAGATAGCAGGATACAGGGGCGTGGGTATAAGTAGGCATACTATGCATGTTATCAAATTTCTGTAGTAGTCTTGTGGTTTTCAAAAGGACAAAAGGAGACTTTTGAGAGCTCAACCTATGTTCTGTACAACAGTGTAACTCAGTGAGTTAAGATAGAGTGAGTTAAGTGAACCCCAGGTGATCTTACACTAATCACCACAGGAATACTAACACCCGAGTGAACCAGTTTTGTACACAGATAAGCAACACTTAGCAGGGTTGGGAATTTCAGGAGTCCCCAGCTggattatgtgaatcatatgttCCCAGCAGAGGAGAATTTCAGTTATT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14712 SLC39A6, LIV1, ZIP6; solute carrier family 39 (zinc transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019834 True 3450 mRNA 0.49 9 48363323 48377033

Neighbor

gene id symbol gene type direction distance location
AMCG00019833 NA coding upstream 10503 48308234 ~ 48352820 (+)
AMCG00019835 NA coding upstream 58885 48258596 ~ 48304438 (+)
AMCG00019831 LOC107555322 coding upstream 186987 48135651 ~ 48176336 (+)
AMCG00019830 NA coding upstream 257190 47977293 ~ 48106133 (+)
AMCG00019821 efr3a,LOC107749108 coding upstream 770169 47580292 ~ 47593154 (+)
AMCG00019836 NA coding downstream 137641 48514674 ~ 48540763 (+)
AMCG00019837 NA coding downstream 164004 48541037 ~ 48541384 (+)
AMCG00019840 NA coding downstream 464013 48841046 ~ 48862434 (+)
AMCG00019841 NA coding downstream 564822 48941855 ~ 48990943 (+)
AMCG00019844 LOC107690276,LOC107721720,LOC108428318 coding downstream 708708 49085741 ~ 49098772 (+)
G37733 NA non-coding upstream 247546 48115465 ~ 48115777 (+)
G37703 NA non-coding upstream 453737 47906060 ~ 47909586 (+)
G37700 NA non-coding upstream 461708 47900317 ~ 47901615 (+)
G37693 NA non-coding upstream 479557 47883538 ~ 47883766 (+)
G37689 NA non-coding upstream 511289 47851604 ~ 47852034 (+)
G37784 LOC100846954 non-coding downstream 145842 48522875 ~ 48575651 (+)
G37783 NA non-coding downstream 166592 48543625 ~ 48549181 (+)
G37820 NA non-coding downstream 260310 48637343 ~ 48638164 (+)
G37871 NA non-coding downstream 486498 48863531 ~ 48863760 (+)
G37876 NA non-coding downstream 537213 48914246 ~ 48914509 (+)
AMCG00019820 efr3a other upstream 705322 47622768 ~ 47658001 (+)
G37561 LOC100136012 other upstream 1571838 46791027 ~ 46791485 (+)
G37372 sugct,LOC107687505 other upstream 2793386 45279455 ~ 45569937 (+)
AMCG00019785 NA other upstream 3919567 44435922 ~ 44443756 (+)
G37105 ssr1 other upstream 4306720 44053074 ~ 44056603 (+)
G37779 NA other downstream 73595 48450628 ~ 48451167 (+)
G37962 NA other downstream 1181449 49558482 ~ 49561383 (+)
G37964 NA other downstream 1185861 49562894 ~ 49563214 (+)
G37968 NA other downstream 1194154 49571187 ~ 49571486 (+)
G38084 NA other downstream 2466722 50843755 ~ 50845879 (+)

Expression


Co-expression Network