G37784 (LOC100846954)


Basic Information

Item Value
gene id G37784
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48522875 ~ 48575651 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU47169
acagtgagagacagaataacaacaaaacaatccagaaaaacgcatttcaaaaaagttataaattgatttgcttgttaatgagggaaatacgtatttgaccccttcgacttagtacttagcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttatcccactcctctttgcagatcctctccaagtcattaaggtttaaaggctgacgtttggcaactccaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccacttcTTTGTTGccattgctgtgtgttttgggtcattgtcgtgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacacaagatttgacggtatatggcccccgtccatcgtccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgatggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacacagttctcctctgaatcattcagatgttcattggcaaacttcagacgggcctgtacatgtgctttcttgagcagggggacctaatcgcaccaactgttgtcaccttctcaccaagctgcttggcaaTGG
>TU47171
acagtgagagacagaataacaacaaaacaatccagaaaaacgcatttcaaaaaagttataaattgatttgcttgttaatgagggaaatacgtatttgaccccttcgacttagtacttagcaaaacccttgttggcaatcacagaggtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgcctttttGGGTCATgatcatgctggaatacccatccacaacccattttcaatgccctggctgagggaagN

Function

NR:

description
PREDICTED: protein disulfide-isomerase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47169 True 812 lncRNA 0.47 2 48522875 48523915
TU47171 False 434 lncRNA 0.44 2 48522875 48575651

Neighbor

gene id symbol gene type direction distance location
AMCG00019834 NA coding upstream 145842 48363323 ~ 48377033 (+)
AMCG00019833 NA coding upstream 170055 48308234 ~ 48352820 (+)
AMCG00019835 NA coding upstream 218437 48258596 ~ 48304438 (+)
AMCG00019831 LOC107555322 coding upstream 346539 48135651 ~ 48176336 (+)
AMCG00019830 NA coding upstream 416742 47977293 ~ 48106133 (+)
AMCG00019840 NA coding downstream 265395 48841046 ~ 48862434 (+)
AMCG00019841 NA coding downstream 366204 48941855 ~ 48990943 (+)
AMCG00019844 LOC107690276,LOC107721720,LOC108428318 coding downstream 510090 49085741 ~ 49098772 (+)
AMCG00019842 LOC106568821,LOC106599468,LOC105018340 coding downstream 532308 49107959 ~ 49110875 (+)
AMCG00019843 NA coding downstream 536100 49111751 ~ 49118626 (+)
G37733 NA non-coding upstream 407098 48115465 ~ 48115777 (+)
G37703 NA non-coding upstream 613289 47906060 ~ 47909586 (+)
G37700 NA non-coding upstream 621260 47900317 ~ 47901615 (+)
G37693 NA non-coding upstream 639109 47883538 ~ 47883766 (+)
G37689 NA non-coding upstream 670841 47851604 ~ 47852034 (+)
G37820 NA non-coding downstream 61692 48637343 ~ 48638164 (+)
G37871 NA non-coding downstream 287880 48863531 ~ 48863760 (+)
G37876 NA non-coding downstream 338595 48914246 ~ 48914509 (+)
G37963 NA non-coding downstream 985852 49561503 ~ 49561789 (+)
G37966 NA non-coding downstream 992941 49568592 ~ 49568857 (+)
G37779 NA other upstream 71708 48450628 ~ 48451167 (+)
AMCG00019820 efr3a other upstream 864874 47622768 ~ 47658001 (+)
G37561 LOC100136012 other upstream 1731390 46791027 ~ 46791485 (+)
G37372 sugct,LOC107687505 other upstream 2952938 45279455 ~ 45569937 (+)
AMCG00019785 NA other upstream 4079119 44435922 ~ 44443756 (+)
G37962 NA other downstream 982831 49558482 ~ 49561383 (+)
G37964 NA other downstream 987243 49562894 ~ 49563214 (+)
G37968 NA other downstream 995536 49571187 ~ 49571486 (+)
G38084 NA other downstream 2268104 50843755 ~ 50845879 (+)

Expression


Co-expression Network